Variant report

Variant	rs1945977
Chromosome Location	chr11:105314827-105314828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10160500	0.81[ASN][1000 genomes]
rs10502048	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10895814	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895826	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1113611	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226739	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226748	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11603521	0.81[ASN][1000 genomes]
rs11823120	0.81[ASN][1000 genomes]
rs12270282	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12271138	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12277692	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12284598	0.84[ASN][1000 genomes]
rs12284832	0.85[ASN][1000 genomes]
rs12287683	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12288207	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12361867	0.88[AFR][1000 genomes]
rs1945958	0.81[ASN][1000 genomes]
rs1945963	0.84[ASN][1000 genomes]
rs2032412	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2032413	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55716661	0.83[EUR][1000 genomes]
rs55885845	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55888831	0.81[ASN][1000 genomes]
rs56334909	0.83[EUR][1000 genomes]
rs58893767	0.84[EUR][1000 genomes]
rs61900581	0.84[EUR][1000 genomes]
rs61900587	0.83[EUR][1000 genomes]
rs61900607	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7120172	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7121772	0.81[ASN][1000 genomes]
rs7125326	0.81[ASN][1000 genomes]
rs7924758	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927980	0.81[ASN][1000 genomes]
rs7935262	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938098	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948827	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9651715	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9804516	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9988916	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9988917	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv556221	chr11:105243371-105392079	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105314200-105315000	ZNF genes & repeats	Gastric	stomach

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