Variant report

Variant	rs2032412
Chromosome Location	chr11:105258987-105258988
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105250266..105253126-chr11:105256715..105259279,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160500	0.83[ASN][1000 genomes]
rs10502048	0.94[ASN][1000 genomes]
rs10895814	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895826	0.93[ASN][1000 genomes]
rs1113611	0.94[ASN][1000 genomes]
rs11226739	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11226748	0.94[ASN][1000 genomes]
rs11603521	0.83[ASN][1000 genomes]
rs11823120	0.83[ASN][1000 genomes]
rs12270282	0.94[ASN][1000 genomes]
rs12271138	0.94[ASN][1000 genomes]
rs12277692	0.94[ASN][1000 genomes]
rs12284832	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12287628	0.81[EUR][1000 genomes]
rs12287683	0.83[ASN][1000 genomes]
rs12288207	0.83[ASN][1000 genomes]
rs1945958	0.83[ASN][1000 genomes]
rs1945963	0.82[ASN][1000 genomes]
rs1945977	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2032413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55885845	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888831	0.83[ASN][1000 genomes]
rs61891502	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61900607	0.90[ASN][1000 genomes]
rs6650182	0.86[EUR][1000 genomes]
rs7108291	0.82[AFR][1000 genomes]
rs7120172	0.92[ASN][1000 genomes]
rs7121772	0.83[ASN][1000 genomes]
rs7125326	0.83[ASN][1000 genomes]
rs7924758	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927980	0.83[ASN][1000 genomes]
rs7935262	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7938098	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7943657	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7948827	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9651715	0.94[ASN][1000 genomes]
rs9804516	0.94[ASN][1000 genomes]
rs9988916	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9988917	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv430427	chr11:105224246-105287241	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv556221	chr11:105243371-105392079	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105258200-105259000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links