Variant report

Variant	rs7948827
Chromosome Location	chr11:105240611-105240612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10502048	0.83[ASN][1000 genomes]
rs10895814	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10895826	0.82[ASN][1000 genomes]
rs1113611	0.83[ASN][1000 genomes]
rs11226739	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11226748	0.83[ASN][1000 genomes]
rs12270282	0.83[ASN][1000 genomes]
rs12271138	0.83[ASN][1000 genomes]
rs12277692	0.83[ASN][1000 genomes]
rs12284832	0.81[EUR][1000 genomes]
rs12287628	0.82[EUR][1000 genomes]
rs1945977	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2032412	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2032413	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55885845	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891502	0.82[EUR][1000 genomes]
rs6650182	0.87[EUR][1000 genomes]
rs7120172	0.81[ASN][1000 genomes]
rs7924758	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7935262	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7938098	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7943657	0.81[EUR][1000 genomes]
rs9651715	0.83[ASN][1000 genomes]
rs9804516	0.83[ASN][1000 genomes]
rs9988916	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9988917	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv523995	chr11:105172049-105243371	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv430427	chr11:105224246-105287241	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv33350	chr11:105225129-105249930	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105232600-105242000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:105238000-105242200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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