Variant report
| Variant | rs12271331 |
|---|---|
| Chromosome Location | chr11:58431215-58431216 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:58343949..58346815-chr11:58430372..58432698,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255073 | Chromatin interaction |
| ENSG00000110031 | Chromatin interaction |
| ENSG00000186660 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11229466 | 0.89[AFR][1000 genomes] |
| rs11229520 | 0.89[AFR][1000 genomes] |
| rs11229525 | 0.89[AFR][1000 genomes] |
| rs11229539 | 0.89[AFR][1000 genomes] |
| rs11229570 | 0.89[AFR][1000 genomes] |
| rs11229571 | 0.89[AFR][1000 genomes] |
| rs12272722 | 0.89[AFR][1000 genomes] |
| rs12281441 | 0.89[AFR][1000 genomes] |
| rs12282241 | 1.00[AFR][1000 genomes] |
| rs12285076 | 0.89[AFR][1000 genomes] |
| rs12286542 | 0.89[AFR][1000 genomes] |
| rs12293904 | 1.00[AFR][1000 genomes] |
| rs12295771 | 0.89[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832168 | chr11:58394060-58564651 | Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1050013 | chr11:58394598-59221090 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 3 | nsv1050444 | chr11:58404467-58434568 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2459713 | chr11:58429707-58437992 | Inactive region | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
