Variant report

Variant	rs11229520
Chromosome Location	chr11:58312118-58312119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58309862..58312416-chr11:58401344..58403309,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10160409	1.00[YRI][hapmap]
rs11229437	1.00[YRI][hapmap]
rs11229466	1.00[AFR][1000 genomes]
rs11229507	1.00[YRI][hapmap]
rs11229508	1.00[YRI][hapmap]
rs11229523	1.00[YRI][hapmap]
rs11229525	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229539	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229546	1.00[YRI][hapmap]
rs11229547	1.00[YRI][hapmap]
rs11229570	1.00[AFR][1000 genomes]
rs11229571	1.00[AFR][1000 genomes]
rs12271331	0.89[AFR][1000 genomes]
rs12272722	1.00[AFR][1000 genomes]
rs12276093	1.00[YRI][hapmap]
rs12278099	0.90[AFR][1000 genomes]
rs12281441	1.00[AFR][1000 genomes]
rs12282241	0.89[AFR][1000 genomes]
rs12282490	1.00[YRI][hapmap]
rs12282535	1.00[YRI][hapmap]
rs12282976	1.00[YRI][hapmap]
rs12285076	1.00[AFR][1000 genomes]
rs12286542	1.00[AFR][1000 genomes]
rs12293904	0.89[AFR][1000 genomes]
rs12295771	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12295857	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58292000-58314000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:58292000-58317200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:58292000-58317600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:58292200-58312200	Weak transcription	Placenta	Placenta
5	chr11:58292200-58312400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:58292200-58314000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:58292200-58316600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:58292200-58316600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:58292200-58317200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:58292200-58317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:58292200-58317200	Weak transcription	Fetal Kidney	kidney
12	chr11:58292200-58317400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:58292200-58327400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:58292600-58313800	Weak transcription	Osteobl	bone
15	chr11:58292600-58315000	Weak transcription	Fetal Lung	lung
16	chr11:58293400-58317000	Weak transcription	Fetal Heart	heart
17	chr11:58293400-58317200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:58293800-58317200	Weak transcription	Brain Germinal Matrix	brain
19	chr11:58294600-58314000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:58295400-58317400	Weak transcription	Psoas Muscle	Psoas
21	chr11:58295800-58312200	Weak transcription	Brain Anterior Caudate	brain
22	chr11:58295800-58312800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:58295800-58313600	Weak transcription	Brain Substantia Nigra	brain
24	chr11:58295800-58314600	Weak transcription	Right Ventricle	heart
25	chr11:58296000-58312800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:58296000-58315800	Weak transcription	HMEC	breast
27	chr11:58296000-58317000	Weak transcription	HSMMtube	muscle
28	chr11:58296000-58317200	Weak transcription	Small Intestine	intestine
29	chr11:58296200-58313800	Weak transcription	Dnd41	blood
30	chr11:58298200-58312200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:58298400-58316000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:58298600-58312200	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:58299600-58313400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:58299800-58316800	Weak transcription	Fetal Stomach	stomach
35	chr11:58299800-58317200	Weak transcription	NHLF	lung
36	chr11:58299800-58320000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:58300000-58312400	Weak transcription	Fetal Intestine Large	intestine
38	chr11:58300000-58312600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:58300000-58314800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:58300000-58317200	Weak transcription	Esophagus	oesophagus
41	chr11:58300000-58317200	Weak transcription	Gastric	stomach
42	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:58300400-58312600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:58300400-58316600	Weak transcription	Aorta	Aorta
45	chr11:58300400-58317200	Weak transcription	Colonic Mucosa	Colon
46	chr11:58300400-58317200	Weak transcription	Pancreas	Pancrea
47	chr11:58300600-58314000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:58300600-58314200	Weak transcription	Ovary	ovary
49	chr11:58300600-58314400	Weak transcription	Lung	lung
50	chr11:58300600-58316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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