Variant report

Variant	rs12281441
Chromosome Location	chr11:58411683-58411684
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10160409	1.00[YRI][hapmap]
rs11229466	1.00[AFR][1000 genomes]
rs11229520	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229525	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[AFR][1000 genomes]
rs11229539	1.00[AFR][1000 genomes]
rs11229570	1.00[AFR][1000 genomes]
rs11229571	1.00[AFR][1000 genomes]
rs12271331	0.89[AFR][1000 genomes]
rs12272722	1.00[AFR][1000 genomes]
rs12278099	0.90[AFR][1000 genomes]
rs12282241	0.89[AFR][1000 genomes]
rs12285076	1.00[AFR][1000 genomes]
rs12286542	1.00[AFR][1000 genomes]
rs12293904	0.89[AFR][1000 genomes]
rs12295771	1.00[AFR][1000 genomes]
rs12295857	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1050444	chr11:58404467-58434568	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58406200-58413000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:58408800-58413000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:58408800-58413000	Weak transcription	Thymus	Thymus
4	chr11:58409000-58411800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:58411200-58413000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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