Variant report

Variant	rs11229571
Chromosome Location	chr11:58427397-58427398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10160409	1.00[YRI][hapmap]
rs11229466	1.00[AFR][1000 genomes]
rs11229520	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229525	1.00[AFR][1000 genomes]
rs11229539	1.00[AFR][1000 genomes]
rs11229570	1.00[AFR][1000 genomes]
rs12271331	0.89[AFR][1000 genomes]
rs12272722	1.00[AFR][1000 genomes]
rs12278099	0.90[AFR][1000 genomes]
rs12281441	1.00[AFR][1000 genomes]
rs12282241	0.89[AFR][1000 genomes]
rs12285076	1.00[AFR][1000 genomes]
rs12286542	1.00[AFR][1000 genomes]
rs12293904	0.89[AFR][1000 genomes]
rs12295771	1.00[AFR][1000 genomes]
rs12295857	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1050444	chr11:58404467-58434568	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58425600-58428000	Enhancers	HMEC	breast
2	chr11:58425800-58428000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:58426000-58427600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:58426000-58427600	Enhancers	NHEK	skin
5	chr11:58426000-58427800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:58426000-58428200	Enhancers	Stomach Mucosa	stomach
7	chr11:58426000-58429000	Enhancers	Fetal Intestine Large	intestine
8	chr11:58426200-58427400	Weak transcription	Esophagus	oesophagus
9	chr11:58426200-58428200	Enhancers	Fetal Intestine Small	intestine
10	chr11:58426400-58428000	Enhancers	Hela-S3	cervix
11	chr11:58426600-58428000	Enhancers	A549	lung
12	chr11:58427000-58427800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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