Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10160259	1.00[AFR][1000 genomes]
rs10160409	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10160825	1.00[AFR][1000 genomes]
rs11229437	1.00[YRI][hapmap]
rs11229492	0.84[AFR][1000 genomes]
rs11229508	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229511	1.00[AFR][1000 genomes]
rs11229520	1.00[YRI][hapmap]
rs11229523	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229525	1.00[YRI][hapmap]
rs11229531	0.91[AFR][1000 genomes]
rs11229539	1.00[YRI][hapmap]
rs11229546	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229547	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11501583	1.00[AFR][1000 genomes]
rs12271558	1.00[AFR][1000 genomes]
rs12276093	1.00[YRI][hapmap]
rs12278835	0.84[AFR][1000 genomes]
rs12282490	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12282535	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12282796	0.84[AFR][1000 genomes]
rs12282872	1.00[AFR][1000 genomes]
rs12282976	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12284057	1.00[AFR][1000 genomes]
rs12286637	0.85[AFR][1000 genomes]
rs12288841	1.00[AFR][1000 genomes]
rs12290992	1.00[AFR][1000 genomes]
rs12291718	0.91[AFR][1000 genomes]
rs12293102	1.00[AFR][1000 genomes]
rs12294453	1.00[AFR][1000 genomes]
rs12294582	1.00[AFR][1000 genomes]
rs12295771	1.00[YRI][hapmap]
rs28392851	0.84[AFR][1000 genomes]
rs28543041	0.84[AFR][1000 genomes]
rs28636578	1.00[AFR][1000 genomes]
rs28853379	1.00[AFR][1000 genomes]
rs35183671	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58266800-58278600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:58266800-58278800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:58267000-58279600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr11:58269400-58277200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:58275400-58281000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:58276400-58277600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:58276600-58277400	Enhancers	HepG2	liver

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