Variant report

Variant	rs11229531
Chromosome Location	chr11:58340659-58340660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10160259	0.91[AFR][1000 genomes]
rs10160409	0.91[AFR][1000 genomes]
rs10160825	0.91[AFR][1000 genomes]
rs11229507	0.91[AFR][1000 genomes]
rs11229508	0.91[AFR][1000 genomes]
rs11229511	0.91[AFR][1000 genomes]
rs11229523	0.91[AFR][1000 genomes]
rs11229546	0.91[AFR][1000 genomes]
rs11229547	0.91[AFR][1000 genomes]
rs11501583	0.91[AFR][1000 genomes]
rs12271558	0.91[AFR][1000 genomes]
rs12282490	0.91[AFR][1000 genomes]
rs12282535	0.91[AFR][1000 genomes]
rs12282872	0.91[AFR][1000 genomes]
rs12282976	0.91[AFR][1000 genomes]
rs12284057	0.91[AFR][1000 genomes]
rs12288841	0.91[AFR][1000 genomes]
rs12290992	0.91[AFR][1000 genomes]
rs12291718	1.00[AFR][1000 genomes]
rs12293102	0.91[AFR][1000 genomes]
rs12294453	0.91[AFR][1000 genomes]
rs12294582	0.91[AFR][1000 genomes]
rs28636578	0.91[AFR][1000 genomes]
rs28853379	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv528190	chr11:58336620-58347765	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58318400-58341000	Weak transcription	Right Ventricle	heart
2	chr11:58318400-58344800	Weak transcription	Fetal Brain Male	brain
3	chr11:58318600-58344400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:58318800-58341400	Weak transcription	Psoas Muscle	Psoas
5	chr11:58319200-58343000	Weak transcription	Fetal Brain Female	brain
6	chr11:58320000-58341000	Weak transcription	HSMMtube	muscle
7	chr11:58320200-58340800	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:58321800-58341200	Weak transcription	Colonic Mucosa	Colon
9	chr11:58321800-58345000	Weak transcription	Ovary	ovary
10	chr11:58322400-58344200	Weak transcription	Fetal Lung	lung
11	chr11:58329400-58341000	Weak transcription	Brain Angular Gyrus	brain
12	chr11:58329400-58342600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:58329400-58344400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:58330200-58343000	Weak transcription	Fetal Kidney	kidney
15	chr11:58330600-58345000	Weak transcription	Gastric	stomach
16	chr11:58331400-58341000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:58337000-58341200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:58337200-58343800	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:58337400-58340800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:58337400-58341000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr11:58337600-58340800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:58337600-58341000	Weak transcription	Brain Anterior Caudate	brain
23	chr11:58337600-58341000	Weak transcription	Brain Substantia Nigra	brain
24	chr11:58337600-58341000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:58337600-58341000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:58337600-58341000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:58337600-58341200	Weak transcription	Adipose Nuclei	Adipose
28	chr11:58337600-58342600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:58337600-58343000	Weak transcription	Spleen	Spleen
30	chr11:58337600-58343200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:58337600-58343800	Weak transcription	Aorta	Aorta
32	chr11:58337600-58345000	Weak transcription	Lung	lung
33	chr11:58337800-58343800	Weak transcription	Fetal Intestine Small	intestine
34	chr11:58338200-58340800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:58338200-58340800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:58338200-58341000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:58338200-58341000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:58338200-58341000	Weak transcription	HSMM	muscle
39	chr11:58338200-58341200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:58338200-58343800	Weak transcription	Fetal Intestine Large	intestine
41	chr11:58338200-58344200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:58338400-58341200	Weak transcription	Liver	Liver
43	chr11:58338800-58343600	Active TSS	GM12878-XiMat	blood
44	chr11:58338800-58344200	Weak transcription	Fetal Stomach	stomach
45	chr11:58339200-58340800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:58339200-58340800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:58339200-58341400	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr11:58339400-58344200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:58339600-58341000	Enhancers	NHDF-Ad	bronchial
50	chr11:58339600-58341200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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