Variant report
| Variant | rs11229511 |
|---|---|
| Chromosome Location | chr11:58283633-58283634 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10160259 | 1.00[AFR][1000 genomes] |
| rs10160409 | 1.00[AFR][1000 genomes] |
| rs10160825 | 1.00[AFR][1000 genomes] |
| rs11229492 | 0.84[AFR][1000 genomes] |
| rs11229507 | 1.00[AFR][1000 genomes] |
| rs11229508 | 1.00[AFR][1000 genomes] |
| rs11229523 | 1.00[AFR][1000 genomes] |
| rs11229531 | 0.91[AFR][1000 genomes] |
| rs11229546 | 1.00[AFR][1000 genomes] |
| rs11229547 | 1.00[AFR][1000 genomes] |
| rs11501583 | 1.00[AFR][1000 genomes] |
| rs12271558 | 1.00[AFR][1000 genomes] |
| rs12278835 | 0.84[AFR][1000 genomes] |
| rs12282490 | 1.00[AFR][1000 genomes] |
| rs12282535 | 1.00[AFR][1000 genomes] |
| rs12282796 | 0.84[AFR][1000 genomes] |
| rs12282872 | 1.00[AFR][1000 genomes] |
| rs12282976 | 1.00[AFR][1000 genomes] |
| rs12284057 | 1.00[AFR][1000 genomes] |
| rs12286637 | 0.85[AFR][1000 genomes] |
| rs12288841 | 1.00[AFR][1000 genomes] |
| rs12290992 | 1.00[AFR][1000 genomes] |
| rs12291718 | 0.91[AFR][1000 genomes] |
| rs12293102 | 1.00[AFR][1000 genomes] |
| rs12294453 | 1.00[AFR][1000 genomes] |
| rs12294582 | 1.00[AFR][1000 genomes] |
| rs28392851 | 0.84[AFR][1000 genomes] |
| rs28543041 | 0.84[AFR][1000 genomes] |
| rs28636578 | 1.00[AFR][1000 genomes] |
| rs28853379 | 1.00[AFR][1000 genomes] |
| rs35183671 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:58281800-58291400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr11:58281800-58291800 | Weak transcription | Muscle Satellite Cultured Cells | -- |
