Variant report
Variant | rs12282796 |
---|---|
Chromosome Location | chr11:58234292-58234293 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10160259 | 0.84[AFR][1000 genomes] |
rs10160409 | 0.84[AFR][1000 genomes] |
rs10160825 | 0.84[AFR][1000 genomes] |
rs11229492 | 1.00[AFR][1000 genomes] |
rs11229507 | 0.84[AFR][1000 genomes] |
rs11229508 | 0.84[AFR][1000 genomes] |
rs11229511 | 0.84[AFR][1000 genomes] |
rs11229523 | 0.84[AFR][1000 genomes] |
rs11229546 | 0.84[AFR][1000 genomes] |
rs11229547 | 0.84[AFR][1000 genomes] |
rs11501583 | 0.84[AFR][1000 genomes] |
rs12271558 | 0.84[AFR][1000 genomes] |
rs12278835 | 1.00[AFR][1000 genomes] |
rs12282490 | 0.84[AFR][1000 genomes] |
rs12282535 | 0.84[AFR][1000 genomes] |
rs12282872 | 0.84[AFR][1000 genomes] |
rs12282976 | 0.84[AFR][1000 genomes] |
rs12284057 | 0.84[AFR][1000 genomes] |
rs12288841 | 0.84[AFR][1000 genomes] |
rs12290992 | 0.84[AFR][1000 genomes] |
rs12293102 | 0.84[AFR][1000 genomes] |
rs12294453 | 0.84[AFR][1000 genomes] |
rs12294582 | 0.84[AFR][1000 genomes] |
rs28392851 | 1.00[AFR][1000 genomes] |
rs28543041 | 1.00[AFR][1000 genomes] |
rs28636578 | 0.84[AFR][1000 genomes] |
rs28853379 | 0.84[AFR][1000 genomes] |
rs35183671 | 1.00[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
2 | nsv517849 | chr11:58129053-58264181 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
3 | nsv1042491 | chr11:58134936-58263639 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:58233400-58234600 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
2 | chr11:58233600-58236400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |