Variant report

Variant	rs28392851
Chromosome Location	chr11:58261810-58261811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10160259	0.84[AFR][1000 genomes]
rs10160409	0.84[AFR][1000 genomes]
rs10160825	0.84[AFR][1000 genomes]
rs11229492	1.00[AFR][1000 genomes]
rs11229507	0.84[AFR][1000 genomes]
rs11229508	0.84[AFR][1000 genomes]
rs11229511	0.84[AFR][1000 genomes]
rs11229523	0.84[AFR][1000 genomes]
rs11229546	0.84[AFR][1000 genomes]
rs11229547	0.84[AFR][1000 genomes]
rs11501583	0.84[AFR][1000 genomes]
rs12271558	0.84[AFR][1000 genomes]
rs12278835	1.00[AFR][1000 genomes]
rs12282490	0.84[AFR][1000 genomes]
rs12282535	0.84[AFR][1000 genomes]
rs12282796	1.00[AFR][1000 genomes]
rs12282872	0.84[AFR][1000 genomes]
rs12282976	0.84[AFR][1000 genomes]
rs12284057	0.84[AFR][1000 genomes]
rs12288841	0.84[AFR][1000 genomes]
rs12290992	0.84[AFR][1000 genomes]
rs12293102	0.84[AFR][1000 genomes]
rs12294453	0.84[AFR][1000 genomes]
rs12294582	0.84[AFR][1000 genomes]
rs28543041	1.00[AFR][1000 genomes]
rs28636578	0.84[AFR][1000 genomes]
rs28853379	0.84[AFR][1000 genomes]
rs35183671	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv976518	chr11:58247628-58271109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58252400-58265200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:58260400-58262000	Weak transcription	Aorta	Aorta
3	chr11:58261000-58262200	Enhancers	HSMM	muscle
4	chr11:58261000-58262400	Enhancers	NHLF	lung
5	chr11:58261000-58262600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:58261000-58262600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:58261000-58263800	Enhancers	HSMMtube	muscle
8	chr11:58261200-58262800	Enhancers	Osteobl	bone
9	chr11:58261200-58263000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:58261400-58265400	Weak transcription	NHEK	skin
11	chr11:58261800-58262200	Enhancers	GM12878-XiMat	blood
12	chr11:58261800-58262600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr11:58261800-58262800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:58261800-58263800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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