The 2.0 version of rSNPBase

Variant report

Variant rs12294453
Chromosome Location chr11:58323573-58323574
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:58292200-58327400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr11:58300000-58340600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr11:58300600-58338600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr11:58308200-58324000 Weak transcription NH-A brain
5 chr11:58309000-58336200 Weak transcription NHEK skin
6 chr11:58309600-58338800 Strong transcription Primary monocytes fromperipheralblood blood
7 chr11:58310000-58330000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
8 chr11:58310600-58331000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr11:58315200-58328000 Weak transcription HepG2 liver
10 chr11:58315600-58340400 Weak transcription Stomach Mucosa stomach
11 chr11:58318000-58330000 Weak transcription Small Intestine intestine
12 chr11:58318200-58328600 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr11:58318200-58329000 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr11:58318200-58336400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr11:58318400-58329000 Weak transcription Fetal Kidney kidney
16 chr11:58318400-58329800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr11:58318400-58341000 Weak transcription Right Ventricle heart
18 chr11:58318400-58344800 Weak transcription Fetal Brain Male brain
19 chr11:58318600-58344400 Weak transcription Placenta Amnion Placenta Amnion
20 chr11:58318800-58332000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr11:58318800-58336800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr11:58318800-58340600 Weak transcription NHLF lung
23 chr11:58318800-58341400 Weak transcription Psoas Muscle Psoas
24 chr11:58319000-58324200 Weak transcription Esophagus oesophagus
25 chr11:58319200-58343000 Weak transcription Fetal Brain Female brain
26 chr11:58319800-58329800 Weak transcription Primary hematopoietic stem cells blood
27 chr11:58320000-58330000 Weak transcription Aorta Aorta
28 chr11:58320000-58330000 Weak transcription Gastric stomach
29 chr11:58320000-58330000 Weak transcription Pancreas Pancrea
30 chr11:58320000-58341000 Weak transcription HSMMtube muscle
31 chr11:58320200-58340800 Weak transcription Colon Smooth Muscle Colon
32 chr11:58320400-58329000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr11:58320600-58338200 Weak transcription HMEC breast
34 chr11:58321400-58329000 Weak transcription Brain Angular Gyrus brain
35 chr11:58321400-58329000 Weak transcription Brain Substantia Nigra brain
36 chr11:58321600-58336400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr11:58321600-58337200 Weak transcription Rectal Smooth Muscle rectum
38 chr11:58321600-58340400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr11:58321800-58329800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr11:58321800-58330000 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr11:58321800-58340400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr11:58321800-58341200 Weak transcription Colonic Mucosa Colon
43 chr11:58321800-58345000 Weak transcription Ovary ovary
44 chr11:58322000-58328400 Weak transcription Brain Anterior Caudate brain
45 chr11:58322000-58329000 Weak transcription Brain Inferior Temporal Lobe brain
46 chr11:58322000-58336400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr11:58322200-58332400 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr11:58322200-58336400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr11:58322200-58337000 Weak transcription Primary neutrophils fromperipheralblood blood
50 chr11:58322400-58324200 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015