Variant report

Variant	rs11229523
Chromosome Location	chr11:58313868-58313869
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58313234..58315538-chr11:58317214..58319638,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10160259	1.00[AFR][1000 genomes]
rs10160409	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10160825	1.00[AFR][1000 genomes]
rs11229437	1.00[YRI][hapmap]
rs11229492	0.84[AFR][1000 genomes]
rs11229507	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229508	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229511	1.00[AFR][1000 genomes]
rs11229520	1.00[YRI][hapmap]
rs11229525	1.00[YRI][hapmap]
rs11229531	0.91[AFR][1000 genomes]
rs11229539	1.00[YRI][hapmap]
rs11229546	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229547	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11501583	1.00[AFR][1000 genomes]
rs12271558	1.00[AFR][1000 genomes]
rs12276093	1.00[YRI][hapmap]
rs12278835	0.84[AFR][1000 genomes]
rs12282490	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12282535	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12282796	0.84[AFR][1000 genomes]
rs12282872	1.00[AFR][1000 genomes]
rs12282976	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12284057	1.00[AFR][1000 genomes]
rs12286637	0.85[AFR][1000 genomes]
rs12288841	1.00[AFR][1000 genomes]
rs12290992	1.00[AFR][1000 genomes]
rs12291718	0.91[AFR][1000 genomes]
rs12293102	1.00[AFR][1000 genomes]
rs12294453	1.00[AFR][1000 genomes]
rs12294582	1.00[AFR][1000 genomes]
rs12295771	1.00[YRI][hapmap]
rs28392851	0.84[AFR][1000 genomes]
rs28543041	0.84[AFR][1000 genomes]
rs28636578	1.00[AFR][1000 genomes]
rs28853379	1.00[AFR][1000 genomes]
rs35183671	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58292000-58314000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:58292000-58317200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:58292000-58317600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:58292200-58314000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:58292200-58316600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:58292200-58316600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:58292200-58317200	Weak transcription	Brain Angular Gyrus	brain
8	chr11:58292200-58317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:58292200-58317200	Weak transcription	Fetal Kidney	kidney
10	chr11:58292200-58317400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:58292200-58327400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:58292600-58315000	Weak transcription	Fetal Lung	lung
13	chr11:58293400-58317000	Weak transcription	Fetal Heart	heart
14	chr11:58293400-58317200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:58293800-58317200	Weak transcription	Brain Germinal Matrix	brain
16	chr11:58294600-58314000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:58295400-58317400	Weak transcription	Psoas Muscle	Psoas
18	chr11:58295800-58314600	Weak transcription	Right Ventricle	heart
19	chr11:58296000-58315800	Weak transcription	HMEC	breast
20	chr11:58296000-58317000	Weak transcription	HSMMtube	muscle
21	chr11:58296000-58317200	Weak transcription	Small Intestine	intestine
22	chr11:58298400-58316000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:58299800-58316800	Weak transcription	Fetal Stomach	stomach
24	chr11:58299800-58317200	Weak transcription	NHLF	lung
25	chr11:58299800-58320000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:58300000-58314800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:58300000-58317200	Weak transcription	Esophagus	oesophagus
28	chr11:58300000-58317200	Weak transcription	Gastric	stomach
29	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:58300400-58316600	Weak transcription	Aorta	Aorta
31	chr11:58300400-58317200	Weak transcription	Colonic Mucosa	Colon
32	chr11:58300400-58317200	Weak transcription	Pancreas	Pancrea
33	chr11:58300600-58314000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:58300600-58314200	Weak transcription	Ovary	ovary
35	chr11:58300600-58314400	Weak transcription	Lung	lung
36	chr11:58300600-58316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:58300600-58316600	Weak transcription	Fetal Intestine Small	intestine
38	chr11:58300600-58317200	Weak transcription	Spleen	Spleen
39	chr11:58300600-58338600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:58301200-58314800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:58306000-58322400	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr11:58307000-58316200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:58308200-58324000	Weak transcription	NH-A	brain
44	chr11:58309000-58336200	Weak transcription	NHEK	skin
45	chr11:58309400-58323400	Weak transcription	HUVEC	blood vessel
46	chr11:58309600-58338800	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr11:58309800-58317800	Weak transcription	Fetal Brain Male	brain
48	chr11:58309800-58322600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr11:58310000-58330000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:58310200-58322400	Strong transcription	Primary B cells from peripheral blood	blood

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