Variant report

Variant	rs11501583
Chromosome Location	chr11:58299767-58299768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10160259	1.00[AFR][1000 genomes]
rs10160409	1.00[AFR][1000 genomes]
rs10160825	1.00[AFR][1000 genomes]
rs11229492	0.84[AFR][1000 genomes]
rs11229507	1.00[AFR][1000 genomes]
rs11229508	1.00[AFR][1000 genomes]
rs11229511	1.00[AFR][1000 genomes]
rs11229523	1.00[AFR][1000 genomes]
rs11229531	0.91[AFR][1000 genomes]
rs11229546	1.00[AFR][1000 genomes]
rs11229547	1.00[AFR][1000 genomes]
rs12271558	1.00[AFR][1000 genomes]
rs12278835	0.84[AFR][1000 genomes]
rs12282490	1.00[AFR][1000 genomes]
rs12282535	1.00[AFR][1000 genomes]
rs12282796	0.84[AFR][1000 genomes]
rs12282872	1.00[AFR][1000 genomes]
rs12282976	1.00[AFR][1000 genomes]
rs12284057	1.00[AFR][1000 genomes]
rs12286637	0.85[AFR][1000 genomes]
rs12288841	1.00[AFR][1000 genomes]
rs12290992	1.00[AFR][1000 genomes]
rs12291718	0.91[AFR][1000 genomes]
rs12293102	1.00[AFR][1000 genomes]
rs12294453	1.00[AFR][1000 genomes]
rs12294582	1.00[AFR][1000 genomes]
rs28392851	0.84[AFR][1000 genomes]
rs28543041	0.84[AFR][1000 genomes]
rs28636578	1.00[AFR][1000 genomes]
rs28853379	1.00[AFR][1000 genomes]
rs35183671	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58292000-58314000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:58292000-58317200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:58292000-58317600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:58292200-58299800	Weak transcription	NH-A	brain
5	chr11:58292200-58307200	Weak transcription	NHDF-Ad	bronchial
6	chr11:58292200-58311400	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:58292200-58312200	Weak transcription	Placenta	Placenta
8	chr11:58292200-58312400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:58292200-58314000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:58292200-58316600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:58292200-58316600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:58292200-58317200	Weak transcription	Brain Angular Gyrus	brain
13	chr11:58292200-58317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:58292200-58317200	Weak transcription	Fetal Kidney	kidney
15	chr11:58292200-58317400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:58292200-58327400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:58292600-58313800	Weak transcription	Osteobl	bone
18	chr11:58292600-58315000	Weak transcription	Fetal Lung	lung
19	chr11:58293000-58301800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:58293400-58317000	Weak transcription	Fetal Heart	heart
21	chr11:58293400-58317200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:58293800-58317200	Weak transcription	Brain Germinal Matrix	brain
23	chr11:58294200-58301200	Strong transcription	Adipose Nuclei	Adipose
24	chr11:58294400-58300000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:58294400-58301000	Strong transcription	Liver	Liver
26	chr11:58294600-58299800	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr11:58294600-58314000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:58294800-58302800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr11:58295200-58303400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr11:58295400-58317400	Weak transcription	Psoas Muscle	Psoas
31	chr11:58295800-58312200	Weak transcription	Brain Anterior Caudate	brain
32	chr11:58295800-58312800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:58295800-58313600	Weak transcription	Brain Substantia Nigra	brain
34	chr11:58295800-58314600	Weak transcription	Right Ventricle	heart
35	chr11:58296000-58306000	Weak transcription	GM12878-XiMat	blood
36	chr11:58296000-58306600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:58296000-58312800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:58296000-58315800	Weak transcription	HMEC	breast
39	chr11:58296000-58317000	Weak transcription	HSMMtube	muscle
40	chr11:58296000-58317200	Weak transcription	Small Intestine	intestine
41	chr11:58296200-58310200	Weak transcription	HSMM	muscle
42	chr11:58296200-58313800	Weak transcription	Dnd41	blood
43	chr11:58296600-58310400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:58297000-58301000	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:58297000-58301200	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr11:58297200-58299800	Genic enhancers	Primary T cells fromperipheralblood	blood
47	chr11:58297200-58299800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
48	chr11:58297200-58300400	Strong transcription	Aorta	Aorta
49	chr11:58297200-58300400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr11:58297400-58300000	Strong transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links