Variant report

Variant	rs28543041
Chromosome Location	chr11:58264689-58264690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10160259	0.84[AFR][1000 genomes]
rs10160409	0.84[AFR][1000 genomes]
rs10160825	0.84[AFR][1000 genomes]
rs11229492	1.00[AFR][1000 genomes]
rs11229507	0.84[AFR][1000 genomes]
rs11229508	0.84[AFR][1000 genomes]
rs11229511	0.84[AFR][1000 genomes]
rs11229523	0.84[AFR][1000 genomes]
rs11229546	0.84[AFR][1000 genomes]
rs11229547	0.84[AFR][1000 genomes]
rs11501583	0.84[AFR][1000 genomes]
rs12271558	0.84[AFR][1000 genomes]
rs12278835	1.00[AFR][1000 genomes]
rs12282490	0.84[AFR][1000 genomes]
rs12282535	0.84[AFR][1000 genomes]
rs12282796	1.00[AFR][1000 genomes]
rs12282872	0.84[AFR][1000 genomes]
rs12282976	0.84[AFR][1000 genomes]
rs12284057	0.84[AFR][1000 genomes]
rs12288841	0.84[AFR][1000 genomes]
rs12290992	0.84[AFR][1000 genomes]
rs12293102	0.84[AFR][1000 genomes]
rs12294453	0.84[AFR][1000 genomes]
rs12294582	0.84[AFR][1000 genomes]
rs28392851	1.00[AFR][1000 genomes]
rs28636578	0.84[AFR][1000 genomes]
rs28853379	0.84[AFR][1000 genomes]
rs35183671	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv976518	chr11:58247628-58271109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58252400-58265200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:58261400-58265400	Weak transcription	NHEK	skin
3	chr11:58262600-58274800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:58263000-58265000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr11:58263400-58267200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr11:58263800-58265400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:58263800-58265600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:58263800-58265800	Weak transcription	HSMMtube	muscle
9	chr11:58264400-58265400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:58264400-58270600	Weak transcription	GM12878-XiMat	blood
11	chr11:58264600-58266600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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