Variant report

Variant	rs11229546
Chromosome Location	chr11:58387301-58387302
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:58387289-58387386	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:58386651-58388306	HepG2	liver:	n/a	n/a
3	POLR2A	chr11:58385052-58397818	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:58385876..58387982-chr11:58406021..58408836,2	MCF-7	breast:
2	chr11:58386568..58389944-chr11:58391542..58395484,7	K562	blood:
3	chr11:58343669..58348848-chr11:58387112..58391418,8	K562	blood:
4	chr11:58384026..58388374-chr11:58388500..58391345,3	K562	blood:
5	chr11:58345131..58348848-chr11:58387112..58390850,4	K562	blood:
6	chr11:58364615..58367572-chr11:58387277..58389399,2	K562	blood:

No data

Variant related genes	Relation type
CNTF	TF binding region
ENSG00000242689	Chromatin interaction
ENSG00000255073	Chromatin interaction
ENSG00000110031	Chromatin interaction
ENSG00000186660	Chromatin interaction

rs_ID	r²[population]
rs10160259	1.00[AFR][1000 genomes]
rs10160409	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10160825	1.00[AFR][1000 genomes]
rs11229437	1.00[YRI][hapmap]
rs11229492	0.84[AFR][1000 genomes]
rs11229507	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229508	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229511	1.00[AFR][1000 genomes]
rs11229520	1.00[YRI][hapmap]
rs11229523	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11229525	1.00[YRI][hapmap]
rs11229531	0.91[AFR][1000 genomes]
rs11229539	1.00[YRI][hapmap]
rs11229547	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11501583	1.00[AFR][1000 genomes]
rs12271558	1.00[AFR][1000 genomes]
rs12276093	1.00[YRI][hapmap]
rs12278835	0.84[AFR][1000 genomes]
rs12282490	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12282535	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12282796	0.84[AFR][1000 genomes]
rs12282872	1.00[AFR][1000 genomes]
rs12282976	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12284057	1.00[AFR][1000 genomes]
rs12286637	0.85[AFR][1000 genomes]
rs12288841	1.00[AFR][1000 genomes]
rs12290992	1.00[AFR][1000 genomes]
rs12291718	0.91[AFR][1000 genomes]
rs12293102	1.00[AFR][1000 genomes]
rs12294453	1.00[AFR][1000 genomes]
rs12294582	1.00[AFR][1000 genomes]
rs12295771	1.00[YRI][hapmap]
rs28392851	0.84[AFR][1000 genomes]
rs28543041	0.84[AFR][1000 genomes]
rs28636578	1.00[AFR][1000 genomes]
rs28853379	1.00[AFR][1000 genomes]
rs35183671	0.84[AFR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58363000-58393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:58375800-58388200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:58376600-58388400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:58376600-58391800	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:58376600-58395800	Strong transcription	Fetal Thymus	thymus
6	chr11:58376600-58396200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:58376800-58388200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:58376800-58391600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:58376800-58393200	Strong transcription	Primary B cells from peripheral blood	blood
10	chr11:58376800-58395200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:58376800-58395600	Strong transcription	Dnd41	blood
12	chr11:58377000-58391400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:58377000-58391600	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:58377000-58394600	Strong transcription	K562	blood
15	chr11:58377200-58388000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:58377200-58388600	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:58377200-58388800	Strong transcription	HUVEC	blood vessel
18	chr11:58377200-58389000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:58377200-58393000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:58377200-58393800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:58377200-58393800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:58377200-58394000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:58377200-58394000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:58377200-58394000	Strong transcription	Liver	Liver
25	chr11:58377200-58394000	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr11:58377200-58394400	Strong transcription	A549	lung
27	chr11:58377200-58394600	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr11:58377200-58394800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:58377200-58394800	Strong transcription	Fetal Muscle Trunk	muscle
30	chr11:58377200-58397200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:58377400-58387600	Strong transcription	Primary T cells from cord blood	blood
32	chr11:58377400-58387600	Strong transcription	Fetal Brain Female	brain
33	chr11:58377400-58388200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:58377400-58391200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:58377400-58393600	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr11:58377400-58394600	Strong transcription	Primary hematopoietic stem cells	blood
37	chr11:58377400-58394600	Strong transcription	Fetal Intestine Large	intestine
38	chr11:58377400-58394800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr11:58377400-58394800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr11:58377400-58395200	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:58377600-58388400	Strong transcription	GM12878-XiMat	blood
42	chr11:58377600-58395200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr11:58377800-58388800	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:58377800-58393800	Strong transcription	Primary B cells from cord blood	blood
45	chr11:58378000-58392800	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:58378200-58387600	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:58378200-58388600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:58378400-58392600	Strong transcription	Fetal Lung	lung
49	chr11:58378600-58388200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:58379000-58393600	Strong transcription	Hela-S3	cervix

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