Variant report

Variant	rs12271887
Chromosome Location	chr11:119657625-119657626
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10892455	0.87[ASN][1000 genomes]
rs11217487	1.00[EUR][1000 genomes]
rs11217493	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11217498	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12270015	0.99[ASN][1000 genomes]
rs12270134	0.97[ASN][1000 genomes]
rs12271864	1.00[EUR][1000 genomes]
rs12576164	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12576711	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6589773	1.00[EUR][1000 genomes]
rs7936254	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9633947	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv528824	chr11:119650105-119661809	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12271887	HYOU1	cis	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119654400-119659800	Weak transcription	Fetal Heart	heart
2	chr11:119657200-119658000	Enhancers	Fetal Brain Female	brain
3	chr11:119657200-119658200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:119657200-119658400	Enhancers	Fetal Brain Male	brain
5	chr11:119657200-119663600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:119657400-119658000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:119657400-119658200	Bivalent Enhancer	Placenta	Placenta
8	chr11:119657600-119657800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:119657600-119658000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:119657600-119658400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:119657600-119658400	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links