Variant report

Variant	rs12576711
Chromosome Location	chr11:119655935-119655936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10892455	0.89[ASN][1000 genomes]
rs11217493	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11217498	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12270015	0.99[ASN][1000 genomes]
rs12270134	0.95[ASN][1000 genomes]
rs12271887	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12576164	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7936254	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9633947	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv528824	chr11:119650105-119661809	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119653800-119657200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:119653800-119657400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:119653800-119657400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:119654400-119659800	Weak transcription	Fetal Heart	heart
5	chr11:119654600-119657600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:119654800-119656200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:119655400-119656000	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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