Variant report

Variant	rs12576164
Chromosome Location	chr11:119653991-119653992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10892455	0.89[ASN][1000 genomes]
rs11217493	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11217498	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12270015	0.99[ASN][1000 genomes]
rs12270134	0.95[ASN][1000 genomes]
rs12271887	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12576711	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7936254	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9633947	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv528824	chr11:119650105-119661809	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119647000-119654400	Enhancers	Fetal Heart	heart
2	chr11:119652200-119654200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr11:119652400-119655000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:119652600-119655000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:119652600-119655400	ZNF genes & repeats	GM12878-XiMat	blood
6	chr11:119652800-119654200	Enhancers	NH-A	brain
7	chr11:119653000-119654000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:119653000-119654000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:119653200-119654400	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr11:119653800-119654000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr11:119653800-119657200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:119653800-119657400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:119653800-119657400	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links