Variant report

Variant	rs10892455
Chromosome Location	chr11:119647079-119647080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10892449	0.82[EUR][1000 genomes]
rs11217470	0.82[EUR][1000 genomes]
rs11217472	0.82[EUR][1000 genomes]
rs11217490	1.00[EUR][1000 genomes]
rs11217493	0.99[ASN][1000 genomes]
rs11217498	0.94[ASN][1000 genomes]
rs11600311	1.00[EUR][1000 genomes]
rs11601799	0.85[EUR][1000 genomes]
rs11607146	0.80[EUR][1000 genomes]
rs12270015	0.88[ASN][1000 genomes]
rs12270134	0.84[ASN][1000 genomes]
rs12271887	0.87[ASN][1000 genomes]
rs12576164	0.89[ASN][1000 genomes]
rs12576711	0.89[ASN][1000 genomes]
rs7130866	0.99[EUR][1000 genomes]
rs7936254	0.89[ASN][1000 genomes]
rs7940298	0.82[EUR][1000 genomes]
rs9633947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119641400-119649200	Weak transcription	GM12878-XiMat	blood
2	chr11:119641400-119652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119644400-119649400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:119644600-119648600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:119645000-119648600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:119645200-119652800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:119646800-119647400	Enhancers	Pancreas	Pancrea
8	chr11:119646800-119648400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:119647000-119647200	Enhancers	Left Ventricle	heart
10	chr11:119647000-119647400	Enhancers	Right Atrium	heart
11	chr11:119647000-119647400	Enhancers	Right Ventricle	heart
12	chr11:119647000-119654400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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