Variant report

Variant	rs10892449
Chromosome Location	chr11:119628238-119628239
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119621036..119623872-chr11:119625364..119628565,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10892455	0.82[EUR][1000 genomes]
rs10892466	1.00[ASN][1000 genomes]
rs11217451	0.92[EUR][1000 genomes]
rs11217462	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11217470	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217472	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217490	0.82[EUR][1000 genomes]
rs11217506	1.00[ASN][1000 genomes]
rs11217527	1.00[YRI][hapmap]
rs11217532	1.00[ASN][1000 genomes]
rs11600311	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601799	1.00[ASN][1000 genomes]
rs11607146	1.00[ASN][1000 genomes]
rs11822791	1.00[ASN][1000 genomes]
rs12291317	1.00[ASN][1000 genomes]
rs12361715	1.00[ASN][1000 genomes]
rs12361746	1.00[ASN][1000 genomes]
rs13377581	1.00[ASN][1000 genomes]
rs17123430	1.00[ASN][1000 genomes]
rs59471833	1.00[ASN][1000 genomes]
rs60727471	0.92[EUR][1000 genomes]
rs7103900	1.00[ASN][1000 genomes]
rs7104741	1.00[ASN][1000 genomes]
rs7116647	1.00[ASN][1000 genomes]
rs7128327	0.97[EUR][1000 genomes]
rs7130866	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577171	1.00[ASN][1000 genomes]
rs7940298	0.94[EUR][1000 genomes]
rs9633947	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037739	chr11:119592989-119630641	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119622000-119629200	Enhancers	Brain Germinal Matrix	brain
3	chr11:119623400-119629600	Weak transcription	Spleen	Spleen
4	chr11:119623800-119631800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:119624400-119629800	Weak transcription	Liver	Liver
6	chr11:119625800-119635000	Weak transcription	Pancreas	Pancrea
7	chr11:119626000-119628600	Enhancers	Fetal Brain Male	brain
8	chr11:119626400-119629200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:119626600-119631200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:119626800-119629800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:119626800-119629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:119626800-119634200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:119627000-119628400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:119627000-119628400	Enhancers	Brain Substantia Nigra	brain
15	chr11:119627000-119628400	Enhancers	HSMMtube	muscle
16	chr11:119627400-119629000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:119627400-119630000	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:119627600-119628400	Enhancers	Fetal Brain Female	brain
19	chr11:119627600-119629200	Weak transcription	HMEC	breast
20	chr11:119627800-119630400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:119628000-119628400	Flanking Active TSS	GM12878-XiMat	blood
22	chr11:119628000-119628600	Enhancers	Brain Angular Gyrus	brain
23	chr11:119628000-119628600	Enhancers	Fetal Stomach	stomach
24	chr11:119628200-119628400	Enhancers	Gastric	stomach
25	chr11:119628200-119628400	Enhancers	Left Ventricle	heart
26	chr11:119628200-119628600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links