Variant report

Variant	rs10892466
Chromosome Location	chr11:119661317-119661318
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119660449..119662688-chr11:119663958..119666461,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10892449	1.00[ASN][1000 genomes]
rs11217470	1.00[ASN][1000 genomes]
rs11217472	1.00[ASN][1000 genomes]
rs11217506	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217532	1.00[ASN][1000 genomes]
rs11600311	1.00[ASN][1000 genomes]
rs11601799	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607146	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822791	1.00[ASN][1000 genomes]
rs12291317	1.00[ASN][1000 genomes]
rs12361715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361746	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377581	1.00[ASN][1000 genomes]
rs17123430	1.00[ASN][1000 genomes]
rs35525341	0.80[EUR][1000 genomes]
rs59471833	1.00[ASN][1000 genomes]
rs7103900	1.00[ASN][1000 genomes]
rs7104741	1.00[ASN][1000 genomes]
rs7116647	1.00[ASN][1000 genomes]
rs7130866	1.00[ASN][1000 genomes]
rs73577171	1.00[ASN][1000 genomes]
rs7931818	1.00[ASN][1000 genomes]
rs7947595	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528824	chr11:119650105-119661809	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1837528	chr11:119659918-119666352	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119657200-119663600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:119658000-119661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:119658000-119662400	Weak transcription	Fetal Brain Female	brain
4	chr11:119659200-119662400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr11:119659200-119662800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:119660000-119664200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:119660600-119661600	Weak transcription	Fetal Heart	heart
8	chr11:119660600-119663000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:119660600-119663200	Enhancers	Brain Germinal Matrix	brain
10	chr11:119660800-119665400	Weak transcription	Esophagus	oesophagus
11	chr11:119661000-119662800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr11:119661000-119662800	Enhancers	Fetal Brain Male	brain
13	chr11:119661000-119663200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr11:119661200-119661400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:119661200-119662000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
16	chr11:119661200-119662200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr11:119661200-119662200	Bivalent Enhancer	Fetal Stomach	stomach
18	chr11:119661200-119663000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
19	chr11:119661200-119663000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
20	chr11:119661200-119663000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:119661200-119663000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
22	chr11:119661200-119663000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:119661200-119663200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
24	chr11:119661200-119663200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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