Variant report

Variant	rs17123430
Chromosome Location	chr11:119761556-119761557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119761258..119764589-chr11:119765739..119768852,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10892449	1.00[ASN][1000 genomes]
rs10892466	1.00[ASN][1000 genomes]
rs11217470	1.00[ASN][1000 genomes]
rs11217472	1.00[ASN][1000 genomes]
rs11217506	1.00[ASN][1000 genomes]
rs11217532	1.00[ASN][1000 genomes]
rs11600311	1.00[ASN][1000 genomes]
rs11601799	1.00[ASN][1000 genomes]
rs11607146	1.00[ASN][1000 genomes]
rs11822791	1.00[ASN][1000 genomes]
rs12291317	1.00[ASN][1000 genomes]
rs12361715	1.00[ASN][1000 genomes]
rs12361746	1.00[ASN][1000 genomes]
rs13377581	1.00[ASN][1000 genomes]
rs59471833	1.00[ASN][1000 genomes]
rs7103900	1.00[ASN][1000 genomes]
rs7104741	1.00[ASN][1000 genomes]
rs7116647	1.00[ASN][1000 genomes]
rs7130866	1.00[ASN][1000 genomes]
rs73577171	1.00[ASN][1000 genomes]
rs7931818	1.00[ASN][1000 genomes]
rs7947595	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051526	chr11:119750335-119775811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119746000-119762400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119747200-119768200	Weak transcription	Fetal Intestine Small	intestine
3	chr11:119747600-119762400	Weak transcription	Esophagus	oesophagus
4	chr11:119758600-119761600	Enhancers	Right Ventricle	heart
5	chr11:119758800-119764000	Enhancers	Brain Hippocampus Middle	brain
6	chr11:119759400-119763800	Enhancers	Brain Anterior Caudate	brain
7	chr11:119759800-119761800	Weak transcription	Fetal Brain Male	brain
8	chr11:119760000-119762600	Weak transcription	Right Atrium	heart
9	chr11:119760000-119764200	Enhancers	Brain Substantia Nigra	brain
10	chr11:119760200-119763000	Enhancers	Brain Angular Gyrus	brain
11	chr11:119760200-119764600	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:119760400-119761600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:119760400-119761800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:119760400-119763800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:119760400-119764200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr11:119760800-119761600	Enhancers	Left Ventricle	heart
17	chr11:119760800-119764600	Enhancers	Fetal Heart	heart
18	chr11:119761200-119763000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:119761400-119761600	Bivalent Enhancer	Placenta	Placenta
20	chr11:119761400-119761800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:119761400-119762200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:119761400-119762400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:119761400-119763200	Bivalent Enhancer	Fetal Muscle Leg	muscle

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