Variant report

Variant	rs11217472
Chromosome Location	chr11:119630763-119630764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119617140..119619189-chr11:119629474..119631387,2	MCF-7	breast:
2	chr11:119622344..119624091-chr11:119630061..119631916,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PVRL1-3	chr11:119630742-119630894	ucscGeneNc_uc001pxd_1

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10892449	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892455	0.82[EUR][1000 genomes]
rs10892466	1.00[ASN][1000 genomes]
rs11217451	0.92[EUR][1000 genomes]
rs11217462	0.94[EUR][1000 genomes]
rs11217470	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217490	0.82[EUR][1000 genomes]
rs11217506	1.00[ASN][1000 genomes]
rs11217532	1.00[ASN][1000 genomes]
rs11600311	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601799	1.00[ASN][1000 genomes]
rs11607146	1.00[ASN][1000 genomes]
rs11822791	1.00[ASN][1000 genomes]
rs12291317	1.00[ASN][1000 genomes]
rs12361715	1.00[ASN][1000 genomes]
rs12361746	1.00[ASN][1000 genomes]
rs13377581	1.00[ASN][1000 genomes]
rs17123430	1.00[ASN][1000 genomes]
rs59471833	1.00[ASN][1000 genomes]
rs60727471	0.92[EUR][1000 genomes]
rs7103900	1.00[ASN][1000 genomes]
rs7104741	1.00[ASN][1000 genomes]
rs7116647	1.00[ASN][1000 genomes]
rs7128327	0.97[EUR][1000 genomes]
rs7130866	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577171	1.00[ASN][1000 genomes]
rs7931818	1.00[ASN][1000 genomes]
rs7940298	0.94[EUR][1000 genomes]
rs9633947	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119623800-119631800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:119625800-119635000	Weak transcription	Pancreas	Pancrea
4	chr11:119626600-119631200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119626800-119634200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:119628600-119635000	Weak transcription	Brain Angular Gyrus	brain
7	chr11:119628800-119631000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:119629000-119630800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:119629000-119631000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:119629000-119631000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:119629200-119630800	Enhancers	GM12878-XiMat	blood
12	chr11:119629200-119631000	Enhancers	HMEC	breast
13	chr11:119629200-119631200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:119629200-119631400	Weak transcription	Brain Germinal Matrix	brain
15	chr11:119629400-119630800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:119629400-119631400	Enhancers	HSMMtube	muscle
17	chr11:119629600-119630800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:119629600-119630800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:119629600-119630800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
20	chr11:119629800-119631000	Enhancers	K562	blood
21	chr11:119629800-119631600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:119629800-119631600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:119629800-119631800	Enhancers	Liver	Liver
24	chr11:119630000-119630800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:119630000-119630800	Flanking Active TSS	HSMM	muscle
26	chr11:119630000-119631000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr11:119630000-119631000	Enhancers	Esophagus	oesophagus
28	chr11:119630000-119631000	Enhancers	Fetal Muscle Leg	muscle
29	chr11:119630000-119631200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr11:119630200-119630800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:119630400-119630800	Bivalent Enhancer	NHEK	skin
32	chr11:119630400-119631600	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr11:119630600-119630800	Enhancers	Osteobl	bone
34	chr11:119630600-119631000	Enhancers	NH-A	brain
35	chr11:119630600-119631200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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