Variant report

Variant	rs7940298
Chromosome Location	chr11:119635453-119635454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10892449	0.94[EUR][1000 genomes]
rs10892455	0.82[EUR][1000 genomes]
rs11217451	0.89[EUR][1000 genomes]
rs11217462	0.89[EUR][1000 genomes]
rs11217470	0.94[EUR][1000 genomes]
rs11217472	0.94[EUR][1000 genomes]
rs11217490	0.82[EUR][1000 genomes]
rs11600311	0.82[EUR][1000 genomes]
rs60727471	0.87[EUR][1000 genomes]
rs7128327	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7130866	0.81[EUR][1000 genomes]
rs9633947	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119634000-119635800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:119634000-119636000	Enhancers	Fetal Muscle Leg	muscle
4	chr11:119634200-119635600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:119634200-119635600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:119634200-119635600	Enhancers	HSMMtube	muscle
7	chr11:119634400-119635800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr11:119634800-119635600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:119634800-119635600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:119634800-119635600	Enhancers	Brain Hippocampus Middle	brain
11	chr11:119634800-119635600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr11:119634800-119635800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:119634800-119635800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:119634800-119636000	Enhancers	Liver	Liver
15	chr11:119635000-119635600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:119635000-119635600	Enhancers	Brain Anterior Caudate	brain
17	chr11:119635000-119635600	Enhancers	Colon Smooth Muscle	Colon
18	chr11:119635000-119635600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
19	chr11:119635000-119635600	ZNF genes & repeats	GM12878-XiMat	blood
20	chr11:119635000-119635600	Enhancers	NH-A	brain
21	chr11:119635000-119635600	Enhancers	Osteobl	bone
22	chr11:119635000-119635800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr11:119635000-119635800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:119635000-119635800	Enhancers	Brain Angular Gyrus	brain
25	chr11:119635000-119635800	Enhancers	Brain Cingulate Gyrus	brain
26	chr11:119635000-119635800	Enhancers	Brain Substantia Nigra	brain
27	chr11:119635000-119636000	Enhancers	Pancreas	Pancrea
28	chr11:119635000-119636000	Enhancers	Stomach Smooth Muscle	stomach
29	chr11:119635200-119635600	Enhancers	Adipose Nuclei	Adipose
30	chr11:119635200-119635600	Enhancers	HMEC	breast
31	chr11:119635200-119635800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:119635200-119635800	Enhancers	Duodenum Mucosa	Duodenum
33	chr11:119635200-119635800	Enhancers	Psoas Muscle	Psoas
34	chr11:119635200-119636400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr11:119635400-119635600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:119635400-119647000	Weak transcription	Right Ventricle	heart

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