Variant report

Variant	rs7128327
Chromosome Location	chr11:119631281-119631282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10892449	0.97[EUR][1000 genomes]
rs11217451	0.89[EUR][1000 genomes]
rs11217462	0.94[EUR][1000 genomes]
rs11217470	0.97[EUR][1000 genomes]
rs11217472	0.97[EUR][1000 genomes]
rs60727471	0.92[EUR][1000 genomes]
rs7940298	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119623800-119631800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:119625800-119635000	Weak transcription	Pancreas	Pancrea
4	chr11:119626800-119634200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:119628600-119635000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:119629200-119631400	Weak transcription	Brain Germinal Matrix	brain
7	chr11:119629400-119631400	Enhancers	HSMMtube	muscle
8	chr11:119629800-119631600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:119629800-119631600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:119629800-119631800	Enhancers	Liver	Liver
11	chr11:119630400-119631600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:119630800-119635000	Weak transcription	GM12878-XiMat	blood
13	chr11:119631000-119631400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:119631000-119634800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:119631000-119635200	Weak transcription	HMEC	breast
16	chr11:119631200-119631400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:119631200-119631600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:119631200-119635400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links