Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:119641454..119644378-chr11:119651426..119653026,2	MCF-7	breast:
2	chr11:119631709..119634169-chr11:119639966..119641881,2	MCF-7	breast:
3	chr11:119640548..119642898-chr11:119644678..119646239,2	MCF-7	breast:
4	chr11:119637512..119639689-chr11:119641320..119643671,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PVRL1-3	chr11:119641785-119641851	ucscGeneNc_uc001pxd_1

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10892449	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892455	1.00[EUR][1000 genomes]
rs10892466	1.00[ASN][1000 genomes]
rs11217470	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217472	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11217506	1.00[ASN][1000 genomes]
rs11217532	1.00[ASN][1000 genomes]
rs11601799	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607146	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822791	1.00[ASN][1000 genomes]
rs12291317	1.00[ASN][1000 genomes]
rs12361715	1.00[ASN][1000 genomes]
rs12361746	1.00[ASN][1000 genomes]
rs13377581	1.00[ASN][1000 genomes]
rs17123430	1.00[ASN][1000 genomes]
rs59471833	1.00[ASN][1000 genomes]
rs7103900	1.00[ASN][1000 genomes]
rs7104741	1.00[ASN][1000 genomes]
rs7116647	1.00[ASN][1000 genomes]
rs7130866	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577171	1.00[ASN][1000 genomes]
rs7931818	1.00[ASN][1000 genomes]
rs7940298	0.82[EUR][1000 genomes]
rs7947595	1.00[ASN][1000 genomes]
rs9633947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119635400-119647000	Weak transcription	Right Ventricle	heart
2	chr11:119635800-119643800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:119641200-119642200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr11:119641400-119643000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:119641400-119649200	Weak transcription	GM12878-XiMat	blood
6	chr11:119641400-119652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:119641600-119645000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:119641800-119643000	Weak transcription	Fetal Brain Male	brain
9	chr11:119641800-119644800	Enhancers	Fetal Brain Female	brain

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