Variant report

Variant	rs11217490
Chromosome Location	chr11:119645757-119645758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10892449	0.82[EUR][1000 genomes]
rs10892455	1.00[EUR][1000 genomes]
rs11217470	0.82[EUR][1000 genomes]
rs11217472	0.82[EUR][1000 genomes]
rs11600311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11601799	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11607146	0.80[EUR][1000 genomes]
rs7130866	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7940298	0.82[EUR][1000 genomes]
rs9633947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119635400-119647000	Weak transcription	Right Ventricle	heart
2	chr11:119641400-119649200	Weak transcription	GM12878-XiMat	blood
3	chr11:119641400-119652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119642800-119645800	Enhancers	Brain Germinal Matrix	brain
5	chr11:119644400-119649400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:119644600-119648600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:119645000-119648600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:119645200-119652800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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