Variant report

Variant	rs12273833
Chromosome Location	chr11:18068706-18068707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10832879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024450	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024454	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024455	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274446	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295100	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16935164	1.00[AMR][1000 genomes]
rs16935166	1.00[AMR][1000 genomes]
rs16935167	1.00[AMR][1000 genomes]
rs16935178	1.00[AMR][1000 genomes]
rs16935181	1.00[AMR][1000 genomes]
rs16935189	1.00[AMR][1000 genomes]
rs2403252	1.00[AMR][1000 genomes]
rs4408287	1.00[AMR][1000 genomes]
rs4590847	1.00[AMR][1000 genomes]
rs7129561	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18066400-18069000	Active TSS	Aorta	Aorta
2	chr11:18068000-18068800	Enhancers	HMEC	breast
3	chr11:18068200-18068800	Enhancers	Ovary	ovary
4	chr11:18068200-18073400	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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