Variant report
| Variant | rs16935164 |
|---|---|
| Chromosome Location | chr11:18216373-18216374 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10832879 | 1.00[AMR][1000 genomes] |
| rs11024450 | 1.00[AMR][1000 genomes] |
| rs11024454 | 1.00[AMR][1000 genomes] |
| rs11024455 | 1.00[AMR][1000 genomes] |
| rs12273833 | 1.00[AMR][1000 genomes] |
| rs12274446 | 1.00[MKK][hapmap];1.00[AMR][1000 genomes] |
| rs12292912 | 1.00[MKK][hapmap] |
| rs12295100 | 1.00[AMR][1000 genomes] |
| rs16924922 | 0.93[AFR][1000 genomes] |
| rs16935070 | 0.92[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap] |
| rs16935074 | 1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap] |
| rs16935076 | 1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap] |
| rs16935117 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs16935166 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16935167 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16935174 | 1.00[YRI][hapmap] |
| rs16935178 | 1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16935181 | 1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16935189 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2403252 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4408287 | 0.92[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4590847 | 1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7129561 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949248 | chr11:17791822-18692687 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 156 gene(s) | inside rSNPs | diseases |
| 2 | nsv428569 | chr11:18194030-18350869 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs16935164 | CRYBB2 | trans | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:18211200-18225800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
