Variant report

Variant	rs16935076
Chromosome Location	chr11:18174770-18174771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10466422	1.00[AMR][1000 genomes]
rs11024459	1.00[AMR][1000 genomes]
rs11024463	1.00[AMR][1000 genomes]
rs11024464	1.00[AMR][1000 genomes]
rs11024481	1.00[AMR][1000 genomes]
rs11024483	1.00[AMR][1000 genomes]
rs12270273	1.00[AMR][1000 genomes]
rs12274446	0.90[MKK][hapmap]
rs12276137	1.00[AMR][1000 genomes]
rs12289911	1.00[AMR][1000 genomes]
rs12290774	1.00[AMR][1000 genomes]
rs12290775	1.00[AMR][1000 genomes]
rs12291516	1.00[AMR][1000 genomes]
rs12292912	0.90[MKK][hapmap];1.00[AMR][1000 genomes]
rs12293054	1.00[AMR][1000 genomes]
rs12294948	1.00[AMR][1000 genomes]
rs12295348	1.00[AMR][1000 genomes]
rs12295423	1.00[AMR][1000 genomes]
rs13377295	1.00[AMR][1000 genomes]
rs13377403	1.00[AMR][1000 genomes]
rs16924922	1.00[AFR][1000 genomes]
rs16934928	1.00[AMR][1000 genomes]
rs16934941	1.00[AMR][1000 genomes]
rs16935070	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16935074	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16935117	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16935164	1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16935166	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16935167	0.93[AFR][1000 genomes]
rs16935174	1.00[YRI][hapmap]
rs16935178	1.00[ASW][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16935181	1.00[ASW][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16935189	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2403252	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs28482781	1.00[AMR][1000 genomes]
rs4150577	1.00[CHD][hapmap]
rs4408287	1.00[ASW][hapmap];0.92[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs4590847	1.00[ASW][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7106562	1.00[AMR][1000 genomes]
rs7110450	1.00[AMR][1000 genomes]
rs7120654	1.00[AMR][1000 genomes]
rs7121325	1.00[AMR][1000 genomes]
rs7129230	1.00[AMR][1000 genomes]
rs7938082	1.00[AMR][1000 genomes]
rs7948660	1.00[AMR][1000 genomes]
rs871698	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	esv11709	chr11:18138662-18200717	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3509521	chr11:18159957-18188401	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3509522	chr11:18159957-18188401	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3367251	chr11:18159957-18196082	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv518373	chr11:18164687-18195348	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv975090	chr11:18164912-18189697	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv16635	chr11:18165268-18194893	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2762898	chr11:18166780-18198880	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1038257	chr11:18169410-18198309	Enhancers Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16935076	CRYBB2	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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