Variant report
| Variant | rs28482781 |
|---|---|
| Chromosome Location | chr11:18159342-18159343 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:18158132..18160556-chr11:18162021..18163694,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10466422 | 1.00[AMR][1000 genomes] |
| rs11024459 | 1.00[AMR][1000 genomes] |
| rs11024463 | 1.00[AMR][1000 genomes] |
| rs11024464 | 1.00[AMR][1000 genomes] |
| rs11024481 | 1.00[AMR][1000 genomes] |
| rs11024483 | 1.00[AMR][1000 genomes] |
| rs12270273 | 1.00[AMR][1000 genomes] |
| rs12276137 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12289911 | 1.00[AMR][1000 genomes] |
| rs12290774 | 1.00[AMR][1000 genomes] |
| rs12290775 | 1.00[AMR][1000 genomes] |
| rs12291516 | 1.00[AMR][1000 genomes] |
| rs12292912 | 1.00[AMR][1000 genomes] |
| rs12293054 | 1.00[AMR][1000 genomes] |
| rs12294948 | 1.00[AMR][1000 genomes] |
| rs12295348 | 1.00[AMR][1000 genomes] |
| rs12295423 | 1.00[AMR][1000 genomes] |
| rs13377295 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13377403 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16934928 | 1.00[AMR][1000 genomes] |
| rs16934941 | 1.00[AMR][1000 genomes] |
| rs16935117 | 1.00[AMR][1000 genomes] |
| rs7106562 | 1.00[AMR][1000 genomes] |
| rs7110450 | 1.00[AMR][1000 genomes] |
| rs7120654 | 1.00[AMR][1000 genomes] |
| rs7121325 | 1.00[AMR][1000 genomes] |
| rs7129230 | 1.00[AMR][1000 genomes] |
| rs7938082 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7948660 | 1.00[AMR][1000 genomes] |
| rs871698 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949248 | chr11:17791822-18692687 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 156 gene(s) | inside rSNPs | diseases |
| 2 | esv11709 | chr11:18138662-18200717 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv971990 | chr11:18153921-18164912 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:18156400-18161200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr11:18157200-18165600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
