Variant report
| Variant | rs7938082 |
|---|---|
| Chromosome Location | chr11:18140545-18140546 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:18127466..18129015-chr11:18138742..18140750,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000166788 | Chromatin interaction |
| ENSG00000255254 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10466422 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024459 | 1.00[AMR][1000 genomes] |
| rs11024463 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024464 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024481 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024483 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12270273 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12276137 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12289911 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12290774 | 1.00[AMR][1000 genomes] |
| rs12290775 | 1.00[AMR][1000 genomes] |
| rs12291516 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12292912 | 1.00[AMR][1000 genomes] |
| rs12293054 | 1.00[AMR][1000 genomes] |
| rs12294948 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12295348 | 1.00[AMR][1000 genomes] |
| rs12295423 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13377295 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13377403 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16934928 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16934941 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16935117 | 1.00[AMR][1000 genomes] |
| rs28482781 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7106562 | 1.00[AMR][1000 genomes] |
| rs7110450 | 1.00[AMR][1000 genomes] |
| rs7120654 | 1.00[AMR][1000 genomes] |
| rs7121325 | 1.00[AMR][1000 genomes] |
| rs7129230 | 1.00[AMR][1000 genomes] |
| rs7948660 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs871698 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949248 | chr11:17791822-18692687 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 156 gene(s) | inside rSNPs | diseases |
| 2 | nsv982925 | chr11:18132176-18153921 | Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv11709 | chr11:18138662-18200717 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:18136600-18141600 | Enhancers | HepG2 | liver |
| 2 | chr11:18136800-18141600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 3 | chr11:18137400-18141600 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
