Variant report
| Variant | rs13377403 |
|---|---|
| Chromosome Location | chr11:18133291-18133292 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:18126382..18129107-chr11:18133072..18137043,3 | K562 | blood: | |
| 2 | chr11:18126284..18129283-chr11:18131748..18134155,2 | MCF-7 | breast: | |
| 3 | chr11:18127813..18129704-chr11:18132891..18135867,2 | MCF-7 | breast: | |
| 4 | chr11:18127425..18129160-chr11:18131186..18134005,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255254 | Chromatin interaction |
| ENSG00000166788 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10466422 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024459 | 1.00[AMR][1000 genomes] |
| rs11024463 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024464 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024481 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11024483 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12270273 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12276137 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12289911 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12290774 | 1.00[AMR][1000 genomes] |
| rs12290775 | 1.00[AMR][1000 genomes] |
| rs12291516 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12292912 | 1.00[AMR][1000 genomes] |
| rs12293054 | 1.00[AMR][1000 genomes] |
| rs12294948 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12295348 | 1.00[AMR][1000 genomes] |
| rs12295423 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13377295 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16934928 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16934941 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16935117 | 1.00[AMR][1000 genomes] |
| rs28482781 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7106562 | 1.00[AMR][1000 genomes] |
| rs7110450 | 1.00[AMR][1000 genomes] |
| rs7120654 | 1.00[AMR][1000 genomes] |
| rs7121325 | 1.00[AMR][1000 genomes] |
| rs7129230 | 1.00[AMR][1000 genomes] |
| rs7938082 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7948660 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs871698 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949248 | chr11:17791822-18692687 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 156 gene(s) | inside rSNPs | diseases |
| 2 | nsv983174 | chr11:18127720-18135636 | Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv982925 | chr11:18132176-18153921 | Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:18128400-18137400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr11:18129000-18139000 | Weak transcription | Right Atrium | heart |
