Variant report

Variant	rs11024459
Chromosome Location	chr11:18083151-18083152
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10466422	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10766445	0.82[ASW][hapmap];1.00[MKK][hapmap]
rs11024450	0.85[AFR][1000 genomes]
rs11024463	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024481	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024483	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270273	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274446	0.84[ASW][hapmap];1.00[MKK][hapmap]
rs12276137	1.00[AMR][1000 genomes]
rs12289911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290774	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290775	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291516	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292912	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293054	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294071	0.92[YRI][hapmap]
rs12294948	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295348	1.00[AMR][1000 genomes]
rs12295423	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377295	1.00[AMR][1000 genomes]
rs13377403	1.00[AMR][1000 genomes]
rs16934928	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16934941	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16935070	0.90[MKK][hapmap]
rs16935074	0.90[MKK][hapmap]
rs16935076	0.90[MKK][hapmap]
rs16935117	1.00[AMR][1000 genomes]
rs16935164	1.00[MKK][hapmap]
rs16935178	1.00[MKK][hapmap]
rs16935181	1.00[MKK][hapmap]
rs28482781	1.00[AMR][1000 genomes]
rs4408287	0.90[MKK][hapmap]
rs4590847	1.00[MKK][hapmap]
rs7106562	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110450	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7120654	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121325	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7129230	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938082	1.00[AMR][1000 genomes]
rs7948660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs871698	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18070800-18102600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:18081400-18100400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:18082800-18083800	Enhancers	Liver	Liver
4	chr11:18083000-18083200	Enhancers	Psoas Muscle	Psoas
5	chr11:18083000-18083200	Enhancers	Skeletal Muscle Male	skeletal muscle

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