Variant report

Variant	rs11024450
Chromosome Location	chr11:18065188-18065189
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:18065144-18065194	NHBE	bronchial:	n/a
2	chr11:18065144-18065194	HepG2	liver:	n/a
3	chr11:18065144-18065194	RPTEC	kidney:	n/a
4	chr11:18065144-18065194	PFSK-1	brain:	n/a
5	chr11:18065144-18065194	GM19239	blood:	n/a
6	chr11:18065144-18065194	PrEC	prostate:	n/a
7	chr11:18065144-18065194	CMK	blood:	n/a
8	chr11:18065144-18065194	AG04449	skin:	fetal
9	chr11:18065144-18065194	A549	lung:	n/a
10	chr11:18065144-18065194	SK-N-SH	brain:	n/a
11	chr11:18065144-18065194	MCF10A-Er-Src	breast:	n/a
12	chr11:18065144-18065194	BE2_C	brain:	n/a
13	chr11:18065144-18065194	K562	blood:	n/a
14	chr11:18065144-18065194	HL-60	blood:	n/a
15	chr11:18065144-18065194	GM06990	blood:	n/a
16	chr11:18065144-18065194	HCM	heart:	n/a
17	chr11:18065144-18065194	AG04450	lung:	fetal
18	chr11:18065144-18065194	NHDF-neo	bronchial:	n/a
19	chr11:18065144-18065194	NB4	blood:	n/a
20	chr11:18065144-18065194	HRPEpiC	eye:	n/a
21	chr11:18065144-18065194	ovcar-3	ovarian:	n/a
22	chr11:18065144-18065194	U87	brain:	n/a
23	chr11:18065144-18065194	GM12892	blood:	n/a
24	chr11:18065144-18065194	HIPEpiC	eye:	n/a
25	chr11:18065144-18065194	MCF-7	breast:	n/a
26	chr11:18065144-18065194	T-47D	breast:	n/a
27	chr11:18065144-18065194	Caco-2	colon:	n/a
28	chr11:18065144-18065194	HEK293	kidney:	embryo
29	chr11:18065144-18065194	NT2-D1	testis:	n/a
30	chr11:18065144-18065194	AoSMC	blood vessel:	n/a
31	chr11:18065144-18065194	HEEpiC	esophagus:	n/a
32	chr11:18065144-18065194	BJ	skin:	n/a
33	chr11:18065144-18065194	IMR90	lung:	fetal
34	chr11:18065144-18065194	SAEC	small airway:	n/a
35	chr11:18065144-18065194	HCPEpiC	choroid plexus:	n/a
36	chr11:18065144-18065194	Jurkat	blood:	n/a
37	chr11:18065144-18065194	AG09319	gingival:	n/a
38	chr11:18065144-18065194	HPAEpiC	pulmonary alveolar:	n/a
39	chr11:18065144-18065194	Hela-S3	cervix:	n/a
40	chr11:18065144-18065194	H1-hESC	embryonic stem cell:	embryo
41	chr11:18065144-18065194	PANC-1	pancreas:	n/a
42	chr11:18065144-18065194	SK-N-MC	brain:	n/a
43	chr11:18065144-18065194	LNCaP	prostate:	n/a
44	chr11:18065144-18065194	ProgFib	skin:	n/a
45	chr11:18065144-18065194	HCF	heart:	n/a
46	chr11:18065144-18065194	GM12891	blood:	n/a
47	chr11:18065144-18065194	HRE	kidney:	n/a
48	chr11:18065144-18065194	HRCEpiC	kidney:	n/a
49	chr11:18065144-18065194	HAEpiC	amniotic membrane:	n/a
50	chr11:18065144-18065194	HUVEC	blood vessel:	n/a

No data

Variant related genes	Relation type
TPH1	CpG island

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10832879	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024454	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024455	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11024459	0.85[AFR][1000 genomes]
rs11024463	0.83[AFR][1000 genomes]
rs11024464	0.83[AFR][1000 genomes]
rs12273833	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274446	1.00[AMR][1000 genomes]
rs12289911	0.83[AFR][1000 genomes]
rs12290774	0.82[AFR][1000 genomes]
rs12290775	0.82[AFR][1000 genomes]
rs12295100	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295423	0.83[AFR][1000 genomes]
rs16935164	1.00[AMR][1000 genomes]
rs16935166	1.00[AMR][1000 genomes]
rs16935167	1.00[AMR][1000 genomes]
rs16935178	1.00[AMR][1000 genomes]
rs16935181	1.00[AMR][1000 genomes]
rs16935189	1.00[AMR][1000 genomes]
rs2403252	1.00[AMR][1000 genomes]
rs4408287	1.00[AMR][1000 genomes]
rs4590847	1.00[AMR][1000 genomes]
rs7129561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948660	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18059400-18065400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:18064800-18066400	Weak transcription	Aorta	Aorta
3	chr11:18064800-18067600	Weak transcription	Right Atrium	heart

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