Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:18217784-18218004	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000254546	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10832879	1.00[AMR][1000 genomes]
rs11024450	1.00[AMR][1000 genomes]
rs11024454	1.00[AMR][1000 genomes]
rs11024455	1.00[AMR][1000 genomes]
rs12273833	1.00[AMR][1000 genomes]
rs12274446	1.00[AMR][1000 genomes]
rs12295100	1.00[AMR][1000 genomes]
rs16924922	0.93[AFR][1000 genomes]
rs16935070	1.00[YRI][hapmap]
rs16935074	1.00[YRI][hapmap]
rs16935076	1.00[YRI][hapmap]
rs16935117	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16935164	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16935166	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16935167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16935174	1.00[YRI][hapmap]
rs16935178	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16935181	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2403252	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4408287	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4590847	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7129561	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18211200-18225800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:18217800-18218200	Enhancers	HepG2	liver

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