Variant report

Variant	rs12275763
Chromosome Location	chr11:108886994-108886995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10749932	0.82[ASN][1000 genomes]
rs10749933	0.82[ASN][1000 genomes]
rs10789708	0.83[ASN][1000 genomes]
rs10789709	0.83[ASN][1000 genomes]
rs10890931	0.83[ASN][1000 genomes]
rs10890932	0.83[ASN][1000 genomes]
rs11212855	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212859	0.97[ASN][1000 genomes]
rs11212864	0.81[ASN][1000 genomes]
rs12288802	1.00[ASN][1000 genomes]
rs1396910	0.82[ASN][1000 genomes]
rs1509710	0.82[ASN][1000 genomes]
rs1912234	0.82[ASN][1000 genomes]
rs1912235	0.82[ASN][1000 genomes]
rs1912236	0.82[ASN][1000 genomes]
rs2136532	0.82[ASN][1000 genomes]
rs2136533	0.82[ASN][1000 genomes]
rs2136534	0.82[ASN][1000 genomes]
rs2175173	0.82[ASN][1000 genomes]
rs4331051	0.95[ASN][1000 genomes]
rs4365019	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4370904	0.85[ASN][1000 genomes]
rs4586113	0.83[ASN][1000 genomes]
rs4753858	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4754373	0.95[ASN][1000 genomes]
rs4754375	0.88[ASN][1000 genomes]
rs55773132	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6589046	0.93[ASN][1000 genomes]
rs6589047	0.82[ASN][1000 genomes]
rs66983428	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7101901	0.85[ASN][1000 genomes]
rs7126389	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126518	0.82[ASN][1000 genomes]
rs72996766	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72996782	0.82[AMR][1000 genomes]
rs7927284	0.82[ASN][1000 genomes]
rs7927428	0.82[ASN][1000 genomes]
rs7930665	0.82[ASN][1000 genomes]
rs7930745	0.82[ASN][1000 genomes]
rs7938927	0.82[ASN][1000 genomes]
rs7942258	0.82[ASN][1000 genomes]
rs7948895	0.83[ASN][1000 genomes]
rs7952458	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12275763	DDX10	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108885400-108887800	Enhancers	HUVEC	blood vessel
2	chr11:108885600-108887000	Enhancers	Osteobl	bone
3	chr11:108886200-108887400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:108886200-108887600	Enhancers	NHEK	skin
5	chr11:108886200-108887800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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