Variant report

Variant	rs66983428
Chromosome Location	chr11:108898658-108898659
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10450618	0.83[ASN][1000 genomes]
rs10749932	0.88[ASN][1000 genomes]
rs10749933	0.88[ASN][1000 genomes]
rs10789708	0.86[ASN][1000 genomes]
rs10789709	0.86[ASN][1000 genomes]
rs10890931	0.86[ASN][1000 genomes]
rs10890932	0.86[ASN][1000 genomes]
rs11212855	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11212859	0.94[ASN][1000 genomes]
rs11212864	0.84[ASN][1000 genomes]
rs12275763	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12288802	0.93[ASN][1000 genomes]
rs1396910	0.88[ASN][1000 genomes]
rs1509710	0.88[ASN][1000 genomes]
rs1912234	0.88[ASN][1000 genomes]
rs1912235	0.88[ASN][1000 genomes]
rs1912236	0.88[ASN][1000 genomes]
rs2136532	0.88[ASN][1000 genomes]
rs2136533	0.88[ASN][1000 genomes]
rs2136534	0.88[ASN][1000 genomes]
rs2175173	0.88[ASN][1000 genomes]
rs4331051	0.98[ASN][1000 genomes]
rs4365019	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4370904	0.85[ASN][1000 genomes]
rs4586113	0.86[ASN][1000 genomes]
rs4753858	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4754373	0.98[ASN][1000 genomes]
rs4754375	0.95[ASN][1000 genomes]
rs55773132	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6589046	1.00[ASN][1000 genomes]
rs6589047	0.88[ASN][1000 genomes]
rs7101901	0.92[ASN][1000 genomes]
rs7126389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126518	0.88[ASN][1000 genomes]
rs72996766	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72996782	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7927284	0.88[ASN][1000 genomes]
rs7927428	0.88[ASN][1000 genomes]
rs7930665	0.88[ASN][1000 genomes]
rs7930745	0.88[ASN][1000 genomes]
rs7938927	0.88[ASN][1000 genomes]
rs7942258	0.88[ASN][1000 genomes]
rs7948895	0.86[ASN][1000 genomes]
rs7952458	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108894200-108903800	Weak transcription	Osteobl	bone
2	chr11:108897200-108899000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:108897800-108898800	Weak transcription	A549	lung

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