Variant report

Variant	rs72996766
Chromosome Location	chr11:108914836-108914837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10450618	0.88[ASN][1000 genomes]
rs10749932	0.82[ASN][1000 genomes]
rs10749933	0.82[ASN][1000 genomes]
rs10789708	0.81[ASN][1000 genomes]
rs10789709	0.81[ASN][1000 genomes]
rs10890931	0.81[ASN][1000 genomes]
rs10890932	0.81[ASN][1000 genomes]
rs11212855	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11212859	0.88[ASN][1000 genomes]
rs12275763	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12288802	0.87[ASN][1000 genomes]
rs1396910	0.82[ASN][1000 genomes]
rs1509710	0.82[ASN][1000 genomes]
rs1912234	0.82[ASN][1000 genomes]
rs1912235	0.82[ASN][1000 genomes]
rs1912236	0.82[ASN][1000 genomes]
rs2136532	0.82[ASN][1000 genomes]
rs2136533	0.82[ASN][1000 genomes]
rs2136534	0.82[ASN][1000 genomes]
rs2175173	0.82[ASN][1000 genomes]
rs4331051	0.92[ASN][1000 genomes]
rs4365019	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4586113	0.81[ASN][1000 genomes]
rs4753858	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4754373	0.92[ASN][1000 genomes]
rs4754375	0.99[ASN][1000 genomes]
rs55773132	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6589046	0.94[ASN][1000 genomes]
rs6589047	0.82[ASN][1000 genomes]
rs66983428	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7101901	0.97[ASN][1000 genomes]
rs7126389	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126518	0.82[ASN][1000 genomes]
rs72996782	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7927284	0.82[ASN][1000 genomes]
rs7927428	0.82[ASN][1000 genomes]
rs7930665	0.82[ASN][1000 genomes]
rs7930745	0.82[ASN][1000 genomes]
rs7938927	0.82[ASN][1000 genomes]
rs7942258	0.82[ASN][1000 genomes]
rs7948895	0.81[ASN][1000 genomes]
rs7952458	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108907400-108917400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108907600-108917200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:108914600-108915200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:108914600-108915400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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