Variant report

Variant	rs10450618
Chromosome Location	chr11:108918131-108918132
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10749932	0.93[ASN][1000 genomes]
rs10749933	0.93[ASN][1000 genomes]
rs10789708	0.91[ASN][1000 genomes]
rs10789709	0.91[ASN][1000 genomes]
rs10890931	0.91[ASN][1000 genomes]
rs10890932	0.91[ASN][1000 genomes]
rs1115323	0.83[ASN][1000 genomes]
rs11212864	0.88[ASN][1000 genomes]
rs11212908	0.85[ASN][1000 genomes]
rs12417963	0.85[ASN][1000 genomes]
rs12787129	0.85[ASN][1000 genomes]
rs1396910	0.93[ASN][1000 genomes]
rs1509710	0.93[ASN][1000 genomes]
rs1509715	0.85[ASN][1000 genomes]
rs1509716	0.85[ASN][1000 genomes]
rs1509717	0.85[ASN][1000 genomes]
rs1509729	0.85[ASN][1000 genomes]
rs1605891	0.85[ASN][1000 genomes]
rs17632724	0.85[ASN][1000 genomes]
rs1858177	0.87[ASN][1000 genomes]
rs1858178	0.87[ASN][1000 genomes]
rs1912234	0.93[ASN][1000 genomes]
rs1912235	0.93[ASN][1000 genomes]
rs1912236	0.93[ASN][1000 genomes]
rs1949051	0.85[ASN][1000 genomes]
rs2136532	0.93[ASN][1000 genomes]
rs2136533	0.93[ASN][1000 genomes]
rs2136534	0.93[ASN][1000 genomes]
rs2175173	0.93[ASN][1000 genomes]
rs2884180	0.85[ASN][1000 genomes]
rs35447002	0.82[ASN][1000 genomes]
rs4331051	0.81[ASN][1000 genomes]
rs4365019	0.81[ASN][1000 genomes]
rs4370904	0.90[ASN][1000 genomes]
rs4586113	0.91[ASN][1000 genomes]
rs4753858	0.81[ASN][1000 genomes]
rs4754373	0.81[ASN][1000 genomes]
rs4754375	0.87[ASN][1000 genomes]
rs55773132	0.86[ASN][1000 genomes]
rs6589046	0.83[ASN][1000 genomes]
rs6589047	0.93[ASN][1000 genomes]
rs66983428	0.83[ASN][1000 genomes]
rs7101901	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7126389	0.83[ASN][1000 genomes]
rs7126518	0.93[ASN][1000 genomes]
rs7130125	0.85[ASN][1000 genomes]
rs72996766	0.88[ASN][1000 genomes]
rs7927284	0.93[ASN][1000 genomes]
rs7927428	0.93[ASN][1000 genomes]
rs7930665	0.93[ASN][1000 genomes]
rs7930745	0.93[ASN][1000 genomes]
rs7938927	0.93[ASN][1000 genomes]
rs7942258	0.93[ASN][1000 genomes]
rs7942466	0.85[ASN][1000 genomes]
rs7948895	0.91[ASN][1000 genomes]
rs7952458	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108915600-108922000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:108917200-108918400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:108917200-108919400	Enhancers	Osteobl	bone
4	chr11:108917400-108919800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:108917800-108919800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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