Variant report

Variant	rs1858178
Chromosome Location	chr11:108925985-108925986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10450618	0.87[ASN][1000 genomes]
rs10749932	0.81[ASN][1000 genomes]
rs10749933	0.81[ASN][1000 genomes]
rs10789708	0.83[ASN][1000 genomes]
rs10789709	0.83[ASN][1000 genomes]
rs10890931	0.83[ASN][1000 genomes]
rs10890932	0.83[ASN][1000 genomes]
rs1115323	0.96[ASN][1000 genomes]
rs11212908	0.98[ASN][1000 genomes]
rs12417963	0.98[ASN][1000 genomes]
rs12787129	0.98[ASN][1000 genomes]
rs1396910	0.81[ASN][1000 genomes]
rs1509710	0.81[ASN][1000 genomes]
rs1509715	0.98[ASN][1000 genomes]
rs1509716	0.98[ASN][1000 genomes]
rs1509717	0.98[ASN][1000 genomes]
rs1509729	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1605891	0.98[ASN][1000 genomes]
rs17632724	0.98[ASN][1000 genomes]
rs1858177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912234	0.81[ASN][1000 genomes]
rs1912235	0.81[ASN][1000 genomes]
rs1912236	0.81[ASN][1000 genomes]
rs1949051	0.98[ASN][1000 genomes]
rs2136532	0.81[ASN][1000 genomes]
rs2136533	0.81[ASN][1000 genomes]
rs2136534	0.81[ASN][1000 genomes]
rs2175173	0.81[ASN][1000 genomes]
rs2884180	0.98[ASN][1000 genomes]
rs35447002	0.94[ASN][1000 genomes]
rs4370904	0.81[ASN][1000 genomes]
rs4586113	0.83[ASN][1000 genomes]
rs6589047	0.81[ASN][1000 genomes]
rs7126518	0.81[ASN][1000 genomes]
rs7130125	0.98[ASN][1000 genomes]
rs72996782	0.87[ASN][1000 genomes]
rs7927284	0.81[ASN][1000 genomes]
rs7927428	0.81[ASN][1000 genomes]
rs7930665	0.81[ASN][1000 genomes]
rs7930745	0.81[ASN][1000 genomes]
rs7938927	0.81[ASN][1000 genomes]
rs7942258	0.81[ASN][1000 genomes]
rs7942466	0.98[ASN][1000 genomes]
rs7948895	0.83[ASN][1000 genomes]
rs7952458	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv481	chr11:108921271-108946545	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108925800-108926200	Enhancers	Fetal Kidney	kidney
2	chr11:108925800-108931000	Weak transcription	Right Atrium	heart

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