Variant report
| Variant | rs1949051 |
|---|---|
| Chromosome Location | chr11:108932533-108932534 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:108927357..108928938-chr11:108932482..108934210,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10450618 | 0.85[ASN][1000 genomes] |
| rs10789708 | 0.81[ASN][1000 genomes] |
| rs10789709 | 0.81[ASN][1000 genomes] |
| rs10890931 | 0.81[ASN][1000 genomes] |
| rs10890932 | 0.81[ASN][1000 genomes] |
| rs1115323 | 0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11212908 | 1.00[ASN][1000 genomes] |
| rs12417963 | 1.00[ASN][1000 genomes] |
| rs12787129 | 0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1509715 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1509716 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1509717 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1509729 | 1.00[ASN][1000 genomes] |
| rs1605891 | 1.00[ASN][1000 genomes] |
| rs17632724 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1858177 | 0.98[ASN][1000 genomes] |
| rs1858178 | 0.98[ASN][1000 genomes] |
| rs2884180 | 1.00[ASN][1000 genomes] |
| rs35447002 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4586113 | 0.81[ASN][1000 genomes] |
| rs7130125 | 1.00[ASN][1000 genomes] |
| rs72996782 | 0.85[ASN][1000 genomes] |
| rs7942466 | 1.00[ASN][1000 genomes] |
| rs7948895 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040650 | chr11:108859584-109174553 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv898390 | chr11:108893765-109003536 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv1815918 | chr11:108900487-108948487 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv481 | chr11:108921271-108946545 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:108932400-108935800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
