Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108936870..108939701-chr11:108941192..108943026,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10450618	0.85[ASN][1000 genomes]
rs10789708	0.81[ASN][1000 genomes]
rs10789709	0.81[ASN][1000 genomes]
rs10890931	0.81[ASN][1000 genomes]
rs10890932	0.81[ASN][1000 genomes]
rs1115323	0.98[ASN][1000 genomes]
rs11212908	1.00[ASN][1000 genomes]
rs12417963	1.00[ASN][1000 genomes]
rs1509715	1.00[ASN][1000 genomes]
rs1509716	1.00[ASN][1000 genomes]
rs1509717	1.00[ASN][1000 genomes]
rs1509729	1.00[ASN][1000 genomes]
rs1605891	1.00[ASN][1000 genomes]
rs17632724	1.00[ASN][1000 genomes]
rs1858177	0.98[ASN][1000 genomes]
rs1858178	0.98[ASN][1000 genomes]
rs1949051	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2884180	1.00[ASN][1000 genomes]
rs35447002	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4586113	0.81[ASN][1000 genomes]
rs7130125	1.00[ASN][1000 genomes]
rs72996782	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7942466	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948895	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv481	chr11:108921271-108946545	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108937000-108938600	Weak transcription	Fetal Thymus	thymus
2	chr11:108937000-108940400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:108937200-108938400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

Quick Search: