Variant report

Variant	rs72996782
Chromosome Location	chr11:108922124-108922125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1115323	0.83[ASN][1000 genomes]
rs11212908	0.85[ASN][1000 genomes]
rs12275763	0.82[AMR][1000 genomes]
rs12417963	0.85[ASN][1000 genomes]
rs12787129	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1509715	0.85[ASN][1000 genomes]
rs1509716	0.85[ASN][1000 genomes]
rs1509717	0.85[ASN][1000 genomes]
rs1509729	0.85[ASN][1000 genomes]
rs1605891	0.85[ASN][1000 genomes]
rs17632724	0.85[ASN][1000 genomes]
rs1858177	0.87[ASN][1000 genomes]
rs1858178	0.87[ASN][1000 genomes]
rs1949051	0.85[ASN][1000 genomes]
rs2884180	0.85[ASN][1000 genomes]
rs35447002	0.82[ASN][1000 genomes]
rs4331051	0.83[ASN][1000 genomes]
rs4365019	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4753858	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4754373	0.83[ASN][1000 genomes]
rs4754375	0.90[ASN][1000 genomes]
rs55773132	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6589046	0.85[ASN][1000 genomes]
rs66983428	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7101901	0.88[ASN][1000 genomes]
rs7126389	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7130125	0.85[ASN][1000 genomes]
rs72996766	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7942466	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv437721	chr11:108919802-108922505	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	nsv481	chr11:108921271-108946545	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108922000-108922200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr11:108922000-108922200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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