Variant report
| Variant | rs12277654 |
|---|---|
| Chromosome Location | chr11:60085103-60085104 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10082619 | 1.00[AMR][1000 genomes] |
| rs10082648 | 1.00[AMR][1000 genomes] |
| rs10128741 | 1.00[AMR][1000 genomes] |
| rs10466662 | 1.00[AMR][1000 genomes] |
| rs10466683 | 1.00[AMR][1000 genomes] |
| rs10897012 | 1.00[AMR][1000 genomes] |
| rs11230159 | 1.00[AMR][1000 genomes] |
| rs11230175 | 1.00[AMR][1000 genomes] |
| rs11230176 | 1.00[AMR][1000 genomes] |
| rs11230177 | 1.00[AMR][1000 genomes] |
| rs11230179 | 1.00[AMR][1000 genomes] |
| rs11230181 | 1.00[AMR][1000 genomes] |
| rs11230185 | 1.00[AMR][1000 genomes] |
| rs11230189 | 1.00[AMR][1000 genomes] |
| rs11230191 | 1.00[AMR][1000 genomes] |
| rs11501460 | 1.00[AMR][1000 genomes] |
| rs12269729 | 1.00[AMR][1000 genomes] |
| rs12271072 | 1.00[AMR][1000 genomes] |
| rs12271845 | 1.00[AMR][1000 genomes] |
| rs12272417 | 1.00[AMR][1000 genomes] |
| rs12274187 | 1.00[AMR][1000 genomes] |
| rs12279586 | 1.00[AMR][1000 genomes] |
| rs12281124 | 1.00[AMR][1000 genomes] |
| rs12281249 | 1.00[AMR][1000 genomes] |
| rs12281339 | 1.00[AMR][1000 genomes] |
| rs12285212 | 1.00[AMR][1000 genomes] |
| rs12285390 | 1.00[AMR][1000 genomes] |
| rs12286820 | 1.00[AMR][1000 genomes] |
| rs12286935 | 1.00[AMR][1000 genomes] |
| rs12287486 | 1.00[AMR][1000 genomes] |
| rs12287735 | 1.00[AMR][1000 genomes] |
| rs12288390 | 1.00[AMR][1000 genomes] |
| rs12289301 | 1.00[AMR][1000 genomes] |
| rs12289305 | 1.00[AMR][1000 genomes] |
| rs12291241 | 1.00[AMR][1000 genomes] |
| rs12293784 | 1.00[AMR][1000 genomes] |
| rs12294531 | 1.00[AMR][1000 genomes] |
| rs12295325 | 1.00[AMR][1000 genomes] |
| rs12295720 | 1.00[AMR][1000 genomes] |
| rs13377336 | 1.00[AMR][1000 genomes] |
| rs57191082 | 1.00[AMR][1000 genomes] |
| rs59786720 | 1.00[AMR][1000 genomes] |
| rs61363655 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3449168 | chr11:60084417-60085198 | Weak transcription Flanking Active TSS Enhancers | lncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:60083800-60086200 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr11:60084400-60086400 | Weak transcription | Placenta | Placenta |
| 3 | chr11:60085000-60085800 | Weak transcription | GM12878-XiMat | blood |
