Variant report

Variant	rs10466662
Chromosome Location	chr11:59893045-59893046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59886056..59888504-chr11:59892263..59894071,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10082619	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10082648	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10128741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10466683	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10897012	1.00[AMR][1000 genomes]
rs11230139	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230159	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230175	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230176	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230177	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230179	1.00[AMR][1000 genomes]
rs11230181	1.00[AMR][1000 genomes]
rs11230185	1.00[AMR][1000 genomes]
rs11230189	1.00[AMR][1000 genomes]
rs11230191	1.00[AMR][1000 genomes]
rs11501460	1.00[AMR][1000 genomes]
rs12269729	1.00[AMR][1000 genomes]
rs12270211	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271072	1.00[AMR][1000 genomes]
rs12271845	1.00[AMR][1000 genomes]
rs12271938	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274187	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277654	1.00[AMR][1000 genomes]
rs12278512	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279586	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281249	1.00[AMR][1000 genomes]
rs12281339	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282483	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12284742	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285212	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286820	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286935	1.00[AMR][1000 genomes]
rs12287486	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287735	1.00[AMR][1000 genomes]
rs12288390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288966	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289301	1.00[AMR][1000 genomes]
rs12289305	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289397	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291241	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291355	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291992	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293784	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293900	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294531	1.00[AMR][1000 genomes]
rs12295325	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295720	1.00[AMR][1000 genomes]
rs13377336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1837785	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405337	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57191082	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58413906	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59692218	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59786720	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60175493	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61363655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59879400-59897600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:59889200-59893400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:59889800-59894000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:59891000-59893600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:59891000-59894000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:59891800-59894000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:59892000-59894000	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:59892000-59894000	Enhancers	HUVEC	blood vessel
9	chr11:59892200-59893200	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr11:59892200-59893400	Enhancers	Primary B cells from cord blood	blood
11	chr11:59892400-59893200	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:59892400-59897800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:59892600-59893200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:59892600-59895600	Enhancers	HMEC	breast
15	chr11:59892600-59899200	Weak transcription	Fetal Intestine Large	intestine
16	chr11:59892800-59893200	Weak transcription	Stomach Mucosa	stomach
17	chr11:59892800-59894200	Enhancers	HepG2	liver
18	chr11:59892800-59895400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:59892800-59896400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:59893000-59894600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:59893000-59894600	Weak transcription	Ovary	ovary
22	chr11:59893000-59894600	Weak transcription	Small Intestine	intestine
23	chr11:59893000-59894600	Weak transcription	K562	blood

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