Variant report

Variant	rs59692218
Chromosome Location	chr11:59876646-59876647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10082619	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10082648	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10128741	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10466662	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10466683	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10897012	1.00[AMR][1000 genomes]
rs11230139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230159	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230175	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230176	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230177	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230179	1.00[AMR][1000 genomes]
rs11230181	1.00[AMR][1000 genomes]
rs11230185	1.00[AMR][1000 genomes]
rs11230189	1.00[AMR][1000 genomes]
rs11230191	1.00[AMR][1000 genomes]
rs11501460	1.00[AMR][1000 genomes]
rs12269729	1.00[AMR][1000 genomes]
rs12270211	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271072	1.00[AMR][1000 genomes]
rs12271845	1.00[AMR][1000 genomes]
rs12271938	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272417	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274187	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281124	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281249	1.00[AMR][1000 genomes]
rs12281339	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281633	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282483	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12284742	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285212	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286820	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286935	1.00[AMR][1000 genomes]
rs12287486	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287735	1.00[AMR][1000 genomes]
rs12288390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288966	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289301	1.00[AMR][1000 genomes]
rs12289305	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289397	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291241	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291992	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293784	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293900	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294265	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294531	1.00[AMR][1000 genomes]
rs12295325	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295720	1.00[AMR][1000 genomes]
rs13377336	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1837785	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405337	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57191082	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58413906	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59786720	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60175493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61363655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59869800-59876800	Weak transcription	Small Intestine	intestine
2	chr11:59875000-59877400	Enhancers	Fetal Intestine Small	intestine
3	chr11:59875200-59877000	Enhancers	Stomach Mucosa	stomach
4	chr11:59875200-59877200	Enhancers	K562	blood
5	chr11:59875600-59877200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr11:59875800-59877000	Enhancers	Fetal Intestine Large	intestine
7	chr11:59875800-59877000	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr11:59876000-59877000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:59876000-59878800	Weak transcription	Ovary	ovary
10	chr11:59876200-59877000	Enhancers	Duodenum Mucosa	Duodenum
11	chr11:59876200-59877000	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links