Variant report

Variant	rs12282146
Chromosome Location	chr11:120680301-120680302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120679289..120681891-chr11:120696979..120699784,2	MCF-7	breast:
2	chr11:120680102..120682899-chr11:120699735..120701438,2	MCF-7	breast:
3	chr11:120679595..120682916-chr11:120688352..120691121,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11218009	1.00[ASN][1000 genomes]
rs11218010	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11218012	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11218015	1.00[ASN][1000 genomes]
rs11600068	1.00[ASN][1000 genomes]
rs11821379	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs11824263	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12270392	1.00[ASN][1000 genomes]
rs12271786	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12278106	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs12278827	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12279371	1.00[ASN][1000 genomes]
rs12286679	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12289237	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12289238	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12289919	1.00[GIH][hapmap];0.82[LWK][hapmap];0.82[MKK][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12290923	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12292138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12294471	1.00[ASN][1000 genomes]
rs17124507	1.00[ASN][1000 genomes]
rs4278523	0.86[ASW][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.88[MKK][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57090447	1.00[ASN][1000 genomes]
rs57802696	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58190380	1.00[ASN][1000 genomes]
rs60967271	1.00[ASN][1000 genomes]
rs6589842	0.89[AMR][1000 genomes]
rs7103005	1.00[ASN][1000 genomes]
rs7103215	1.00[ASN][1000 genomes]
rs7103391	1.00[ASN][1000 genomes]
rs7103410	1.00[ASN][1000 genomes]
rs7104632	1.00[ASN][1000 genomes]
rs7104812	1.00[ASN][1000 genomes]
rs7105205	1.00[GIH][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7106024	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs7113703	1.00[ASN][1000 genomes]
rs7119695	1.00[ASN][1000 genomes]
rs7123614	1.00[ASN][1000 genomes]
rs7125796	1.00[ASN][1000 genomes]
rs7129234	1.00[ASN][1000 genomes]
rs7130412	1.00[ASN][1000 genomes]
rs73578576	1.00[ASN][1000 genomes]
rs73578586	1.00[ASN][1000 genomes]
rs73578591	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73578615	1.00[ASN][1000 genomes]
rs7926171	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7938287	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120671400-120687400	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120673600-120687800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:120673600-120687800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120674000-120696000	Weak transcription	Fetal Lung	lung
5	chr11:120678800-120681200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:120678800-120683600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:120678800-120688000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:120679600-120680800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:120679800-120685600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:120680000-120685800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:120680200-120681200	Enhancers	HepG2	liver
12	chr11:120680200-120682000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:120680200-120683200	Weak transcription	Liver	Liver
14	chr11:120680200-120683200	Weak transcription	Placenta	Placenta
15	chr11:120680200-120695000	Weak transcription	H9 Cell Line	embryonic stem cell

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